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Name : rpoB (VAPA_1c07420) Accession : YP_008514540.1 Strain : Genome accession: NC_022247 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, subunit beta RpoB Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 804654 - 808778 bp Length : 4125 bp Strand : + Note : - DNA sequence : ATGGCCCAATCGTCCGCGTACAGTTACACCGAACGCAAGCGCATCCGAAAAAGTTTCGGCAATCGCGACAGCGTCGTAGA AATCCCCTACCTGCTGCAGATGCAGAAAGACGCGTACACCGCGTTCCTGCAAGCCGGCATTCCTCCCAAACAGCGCACCG TCGAAGGCCTGCAGGCCGCGTTCGACGCTGCCTTCCCGATCGTCTCGCACAATGGTTTTGTCGAGATGAAGTTCCTCGAG TACAACCTCGCGAAGCCCGCCTTCGACGTGCGCGAATGCCAGACCCGTGGCCTGACCTTCGCCTCGGCCGTGCGCGCCAA GGTTCAGCTCATCATCTATGACCGCGAATCGTCGACTTCGCAGTCGAAGGTGGTCAAGGAAGTGAAGGAACAAGAGGTCT ACATGGGCGAAGTGCCGCTCATGACCGAAAAGGGTTCCTTCATCATCAACGGCACCGAGCGCGTGATCGTCTCGCAGCTG CACCGTTCGCCGGGCGTGTTCTTCGAACACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTCCTGTTCTCGGCCCGCGT GATTCCCTACCGCGGTTCGTGGCTCGACTTCGAGTTCGACCCGAAGGACATGCTGTACTTCCGCGTCGACCGCCGCCGCA AGATGCCGGTCACGATCCTGCTGAAGGCCATCGGCCTGAACCCGGAATCGATCCTCGCGAACTTCTTCGTGAACGACAAC TTCCGCCTGATGGACAGCGGTGCGCAGATGGAATTCGTTCCCGAGCGCCTGCGCGGCGAAGTCGCGCGCTTCGACATCAC CGACAAGTCGGGCAAGGTCGTGGTCGCCAAGGACAAGCGCGTGACCGCGCGCCACACGCGTGAACTCGAGCAGTCGGGCA CCACGCACATCAGCGTGCCGGAAGACTTCCTGGTCGGCCGCGTCATCGCCCGCAACATCGTCGACGCCGACTCCGGCGAA ATCCTGGCCAAGGCCAACGACGAGCTGACCGAAGCGCTGCTGAAGAAGCTGCGCACGGCCGGCGTGCAGGACATCCAGGT GATCTACACCAACGAACTCGACCAGGGCGCGTACATCTCGCAGACCCTGCGCATCGACGAGACGGTGGACGAGTTCGCAG CCCGCGTGGCCATCTACCGCATGATGCGCCCCGGCGAGCCGCCGACGGAAGACGCAGTGCAGGCCCTGTTCCAGCGCCTG TTCTACAACCCGGACACGTACGACCTGTCGCGCGTCGGCCGCATGAAGTTCAACGCCAAGGTCGGCCGCGACGAATCGAC CGGCCCGATGGTGCTGACCAACGAAGACATCCTGGCCGTGGTCAAGATCCTCGTGGACCTGCGCAACGGCAACGGCGAAG TCGACGACATCGACCACCTGGGCAACCGCCGCGTGCGCTGCGTCGGCGAACTGGCCGAGAACCAGTACCGCACCGGCCTG GCCCGCATCGAGAAGGCCGTGAAGGAACGTCTGGGCCAGGCGGAGCAAGAGCCGCTGATGCCGCACGACCTGATCAACAG CAAGCCGATCTCGGCCGCGCTGAAGGAATTCTTCGGCGCCTCGCAGCTGTCGCAGTTCATGGACCAGACGAACCCGCTGT CCGAAATCACCCACAAGCGCCGCGTGTCGGCCCTTGGCCCGGGCGGTCTGACGCGCGAACGTGCAGGCTTCGAAGTGCGC GACGTGCACGTCACGCATTACGGCCGCGTGTGCCCGATCGAAACGCCTGAAGGCCCGAACATCGGCCTGATCAACTCGCT GGCCCTGTACGCCCGCCTGAACGAATACGGCTTCATCGAGACGCCGTACCGCCGCGTGGTCGATGGCAAGGTCACGATGG ACATCGACTACCTGTCGGCCATCGAAGAAGGCAAGTACGTCATCGCCCAGGCCAATGCGGTCCTGGACAAGGAAGGCAAG CTGATCGGCGACCTGGTCTCCGCCCGCGAAGCCGGCGAATCGATCCTGGTCGGCGCCGAGCGCGTGCAGTACATGGACGT GTCGCCCGCGCAGATCGTGTCGGTGGCTGCATCGCTCGTGCCGTTCCTCGAGCACGACGATGCGAACCGCGCGCTGATGG GCGCCAACATGCAGCGCCAGGCCGTGCCTGTGTTGCGTCCCGAGAAGCCGATCGTCGGTACCGGCATCGAGCGCGTCTCC GCGGTCGACTCGGGCACCGTGGTCACGGCCACCCGTGGCGGTATCGTCGATTACGTCGACGCGACCCGCATCGTGGTGCG CGTGAACGACGCCGAAGCGGCTGCCGGTGAAGTCGGTGTGGACATCTACAACCTGATCAAGTATCAGCGTTCGAACCAGA ACACCAACATCCACCAGCGCCCGATCGTCAAGCGCGGCGACAAGATCGCCAAGGGCGACGTGGTGGCTGACGGCGCATCG ACCGACCTCGGCGAACTGGCCCTGGGCCAGAACATGCTGATCGCGTTTATGCCGTGGAACGGCTACAACTTCGAAGACTC GATCCTGATCTCGGAACGCGTGGTCGCCGAAGACCGCTACACCTCGATCCACATCGAGGAACTGGTGGTGATGGCCCGCG ACACCAAGCTCGGTGCCGAAGAAATCACGCGCGACATCCCGAACCTGGCCGAGCAGCAGCTCAACCGCCTGGACGAATCC GGCATCATCTATGTCGGCGCCGAAGTGCAGCCGGGCGACACGCTGGTGGGCAAGGTCACGCCGAAGGGCGAGACCACGCT GACGCCCGAAGAGAAGCTGCTTCGCGCCATCTTCGGCGAGAAGGCTTCCGACGTGAAGGACACCTCGCTGCGTGTGGACC AGGGCTCGCAAGGCACCGTGATCGACGTGCAGGTGTTCACCCGCGAAGGCATCACGCGCGACAAGCGCGCCCAGCAGATC ATCGACGACGAGCTCAAGCGCTTCCGCCTCGACCTGAACGACCAGCTTCGCATCGTCGAAGCCGACGCGTTCGACCGTAT CGAGAAGCTCTTGACCGGCAAGGTCGCCAACGGCGGCCCGAACAAGCTGGCCAAGGGCACCAAGCTCGACAAGGCCTACC TGTCGTCGGTCGAGAAGTTCCACTGGTTCGACATCCGCCCGGCGGACGACGAAGTGGCGACGCAGCTCGAGTCGATCAAG AACTCGCTCGAGCAGACGCGCCACAGCTTCGACCTCGCGTTCGAAGAAAAGCGCAAGAAGCTCACGCAGGGCGACGAGCT GCCCGCGGGCGTGCTCAAGATGGTCAAGGTCTACCTGGCCGTCAAGCGCCGCCTGCAACCCGGCGACAAGATGGCCGGCC GCCACGGCAACAAGGGTGTGGTGTCGAAGATCGTTCCGGTCGAAGACATGCCCCACATGGCCGACGGCACGCCGTGCGAC ATCTGCCTGAACCCGCTGGGCGTGCCTTCGCGGATGAACGTGGGCCAGGTGCTCGAAGTGCACCTGGGCTGGGCCGGCAA GGGCATCGGCAACCGCATCGGCGACCTGCTGCAGCAAGAGGCCAAGGTGGCCGAGCTGCGCAAGTTCATGGAGCAGCTGT ACAACGGCTCGGGCCGCAAGGAAGAACTCAGCCTGCTGAGCGACACCGACGTGCTCGAAATGGCGGCCAACCTGTCCTCG GGCGCCACCTTCGCCACGCCGGTGTTCGACGGCGCTTCGGAAGATGAAATCCGCGGCATGCTGAAGCTCGCCTATCCGGA CGACATCGCCAAGCTCAAGGGCCTGACCGAGACGCGCACGCAGGCCTACCTGTACGACGGCCGCACCGGCGACCAGTTCG AGCGTCCCGTCACCGTCGGCTACATGCACTTCCTGAAGCTGCATCACCTGGTGGACGACAAGATGCACGCCCGTTCGACC GGCCCGTACTCGCTCGTCACGCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGTTTCGGCGAAATGGAAGT GTGGGCGCTGGAAGCCTACGGCGCCGCCTACGTGCTGCAGGAAATGCTGACCGTGAAGTCCGACGACGTGCAAGGCCGTA CCAAGGTGTACGAGAGCATCGTCAAGGGCGAGCACTCGATCGAAGCCGGCATGCCGGAATCGTTCAACGTGCTGGTCAAG GAAATTCGTTCGCTGGGGCTCGACATCGAGCTCGAGCGTTCTTAA Protein sequence : MAQSSAYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFPIVSHNGFVEMKFLE YNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVKEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQL HRSPGVFFEHDKGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN FRLMDSGAQMEFVPERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDFLVGRVIARNIVDADSGE ILAKANDELTEALLKKLRTAGVQDIQVIYTNELDQGAYISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRL FYNPDTYDLSRVGRMKFNAKVGRDESTGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGL ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVR DVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDGKVTMDIDYLSAIEEGKYVIAQANAVLDKEGK LIGDLVSAREAGESILVGAERVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPIVGTGIERVS AVDSGTVVTATRGGIVDYVDATRIVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRGDKIAKGDVVADGAS TDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDES GIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQI IDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKFHWFDIRPADDEVATQLESIK NSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCD ICLNPLGVPSRMNVGQVLEVHLGWAGKGIGNRIGDLLQQEAKVAELRKFMEQLYNGSGRKEELSLLSDTDVLEMAANLSS GATFATPVFDGASEDEIRGMLKLAYPDDIAKLKGLTETRTQAYLYDGRTGDQFERPVTVGYMHFLKLHHLVDDKMHARST GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVK EIRSLGLDIELERS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 63 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP002695.1.gene18.p0 | Protein | 0.0 | 77 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_008702.1.4609796. | Protein | 0.0 | 73 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_011035.1.6448762. | Protein | 0.0 | 70 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_002695.1.914942.p | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP000034.1.gene3741. | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP001138.1.gene4362. | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP000647.1.gene4402. | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_010400.5987325.p0 | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_009085.4918494.p0 | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_010611.6233925.p0 | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_011595.7060572.p0 | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_010410.6003841.p0 | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | NC_011586.7046027.p0 | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP000675.2.gene392.p | Protein | 0.0 | 63 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | CP004022.1.gene2794. | Protein | 0.0 | 62 |
| rpoB | YP_008514540.1 | DNA-directed RNA polymerase, subunit beta RpoB | AM180355.1.gene120.p | Protein | 0.0 | 45 |
