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Name : Ser39006_0778 (Ser39006_0778) Accession : YP_008521160.1 Strain : Serratia sp. ATCC 39006 Genome accession: NC_022268 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 853456 - 857484 bp Length : 4029 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; HAMAP : DNA-directed RNA polymerase subunit beta; KEGG: rpoB, RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6, RNA polymerase Rpb2 domain 7, RNA polymerase Rpb2 domain 3, RNA polymerase b DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCGCAAGTGTTGGACATACCTTATCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTCATCGAGCAAGATCCGGAAGGTCAGTACGGATTGGAAGCAGCATTCC GTTCTGTTTTCCCAATTAAGAGTTACAGCGGTAATTCAGAGCTGCAATACGTTAGCTATCGCTTGGGCGAGCCGGTGTTT GACGTTAAAGAGTGTCAAATCCGTGGTGTAACGTTTTCTGCACCGCTGCGTGTGAAGTTGCGTCTGGTGATCTACGAGCG CGAAGCGCCGGAAGGCACCGTTAAAGATATTAAAGAACAAGAAGTTTACATGGGCGAAATTCCGCTCATGACAGAAAACG GCACCTTTGTCATTAACGGTACTGAGCGCGTTATCGTATCTCAGTTGCACCGTAGTCCAGGTGTGTTCTTTGACAGCGAC AAGGGTAAAACCCACTCTTCCGGTAAGGTGCTGTATAACGCACGTATTATTCCTTACCGTGGTTCCTGGCTGGATTTTGA ATTCGACCCGAAAGACAATCTGTTTGTCCGTATCGACCGTCGCCGTAAATTACCTGCGACCATCATTCTGCGTGCATTGA GTTACTCTACCGAAGAAATTCTGAATTTGTTCTTCGACAAAGTAGCCTATGAAATCGACAACAATAAGTTGCAGATGGAA CTGGTGCCAGAGCGCTTACGTGGCGAAACTGCTTCTTTTGATATTGAAGCGAATGGCAAGGTCTACATTGAAAAAGGCCG TCGTATCACGGCTCGCCATATCCGTCTGTTAGAAAAAGATGGCATTGAGCGTATTGAAGTACCGGTGGAATACATTGCCG GTAAAGTATTGGCTAAAGATTATATTGATGTCGGCACGGGTGAAGTGATCGCGATGGCGAACATGGAACTGTCGCTGGAT TTGCTGGCTAAACTGAGCCAGGCAGGCCACAAACATATCGAAACGCTGTTTACCAATGATCTTGATCATGGTCCGTATAT GTCTGAGACGCTGCGTGTCGACCCAACCAGTGATCGTCTGAGTGCATTGGTTGAAATTTACCGCATGATGCGTCCGGGTG AGCCACCGACACGTGAAGCGGCTGAAACGCTGTTTGAAAACCTGTTCTTCTCTGAAGATCGTTATGATCTGTCGGCGGTT GGTCGTATGAAGTTCAACCGTTCTTTGCTGCGTGAGGAGATCGAAGGTTCCGGTATCCTGAGCAAAGAAGACATCATCGA AGTGATGAAGAAGCTCATCGATATCCGTAACGGTAAAGGTGAGGTGGATGATATCGACCACCTGGGTAACCGTCGTATCC GTTCTGTTGGTGAAATGGCTGAAAACCAGTTCCGTGTGGGTCTGGTGCGTGTTGAGCGTGCGGTGAAAGAACGCCTGTCA TTGGGCGATCTGGACACATTAATGCCGCAGGATATGATCAATGCCAAGCCGATTTCTGCTGCAGTAAAAGAGTTCTTCGG TTCCAGTCAGTTGTCTCAATTTATGGATCAGAACAACCCACTGTCTGAAATTACGCATAAGCGTCGTATTTCTGCTCTGG GCCCTGGCGGTCTGACCCGTGAACGTGCGGGCTTTGAAGTTCGAGACGTACATCCGACACACTATGGTCGTGTATGTCCT ATCGAGACACCTGAAGGTCCTAACATCGGTCTGATTAACTCGTTGTCTGTATATGCACAGACTAACGAATATGGTTTCCT GGAAACCCCGTATCGTCGTGTTCGTGATGATGTGGTGACAGATGAAATTCATTACCTGTCCGCGATTGAAGAAGGCAATT ACGTTATTGCCCAGGCGAACACCAATCTGGACGAAGAAGGCCATTTCATAGATGAATTGGTTACTTGTCGTAACAAAGGC GAATCCAGCCTGTTTAGCCGCGATCAAGTTGACTATATGGACGTTTCCACCCAGCAGGTGGTTTCTGTCGGTGCATCACT GATTCCGTTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCGGTACCGACTCTGC GTGCTGATAAGCCGCTGGTAGGCACTGGCATGGAGCGTGCGGTAGCGGTGGACTCGGGTGTAACTTCCGTTGCCAAACGT GGTGGTACCGTTCAGTACGTAGATGCTTCCCGTATCGTGATCAAGGTTAACGAAGATGAAATGTATCCGGGCGAAGCCGG CATTGATATCTATAACCTGACCAAATATACCCGTTCCAACCAGAACACTTGTATCAACCAGATGCCTTGCGTATCACTGG GTGAGCCGGTTGAACGCGGTGATGTGTTGGCTGACGGCCCGTCTACCGACCTGGGTGAATTGGCTCTGGGTCAAAACATG CGCGTGGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATTCTCGTATCCGAGCGTGTAGTACAGGAAGATCG TTTCACGACTATCCATATTCAGGAACTGGCATGTGTATCCCGTGATACCAAGTTAGGGCCTGAAGAGATTACTGCGGATA TCCCGAATGTGGGTGAAGCAGCGCTCTCCAAACTGGATGAGTCCGGCATTGTCTATATCGGTGCTGAAGTGACCGGTGGT GATATTCTGGTGGGTAAAGTAACGCCGAAAGGCGAAACTCAACTGACGCCGGAAGAGAAGCTGCTGCGAGCCATCTTTGG TGAAAAAGCGTCTGACGTTAAAGATTCGTCACTGCGTGTGCCAAACGGTGTTTCCGGTACGGTTATCGATGTTCAGGTCT TTACCCGCGATGGTGTGGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGTTGAAGCAGGCCAAAAAAGACCTG ACGGAAGAGCTGCAGATTCTGGAAGCCGGCCTGTTTGCCCGTATTCACTACGTGCTGGTTGCCGGTGGCATTGAAGCTGA GAAGTTGGACAAACTGCCGCGTGAGCGTTGGCTGGAACTGGGTTTGACTGATGAAGAGAAGCAAAATCAGTTAGAACAGC TGGCGGAGCAGTATGACGAATTGAAGCACGAGTTCGAGAAAAAACTCGAAGCTAAACGTCGCAAGATCACTCAAGGTGAT GATCTGGCCCCGGGTGTACTGAAGATCGTTAAGGTGTACTTGGCGGTTAAACGTCAGATTCAGCCAGGCGACAAGATGGC TGGTCGCCACGGTAACAAGGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGCACGCCGG TAGATATTGTACTCAACCCGCTGGGCGTACCATCACGTATGAACATCGGTCAGATTCTGGAAACCCATTTGGGTATGGCT GCGAAAGGTATTGGTGACAAGATTAATGCCATGCTGAAGCAGCAGGAAGAAGTATCCAAATTGCGTGAATTCATCCAGAA AGCCTATGATTTGGGTAATGACGTTCGCCAGAAAGTTGACTTGACCACCTTTACCGATGAAGAAGTGCTGAGGCTGGCGG AAAACCTGAAAAAAGGTATGCCTATCGCCACACCGGTATTTGACGGTGCCAAAGAAAGCGAGATTAAAGAATTGCTGAAA CTGGGTGATCTGCCGACTTCCGGTCAGATTACGTTGTTCGATGGTCGAACTGGTGAGCAATTCGAGCGCTCGGTTACTGT GGGCTACATGTACATGCTGAAACTGAACCATTTGGTGGATGACAAGATGCATGCCCGTTCTACCGGCTCTTATAGTCTGG TTACTCAGCAGCCGTTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCT TACGGTGCAGCCTATACTCTGCAGGAAATGCTGACGGTGAAATCTGATGACGTGAATGGCCGCACCAAGATGTATAAAAA CATCGTGGATGGTGATCACCGGATGGAACCAGGCATGCCGGAGTCCTTCAATGTGTTGTTGAAAGAAATCCGTTCGCTGG GTATCAACATCGAGCTGGAAGAAGATTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIKSYSGNSELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILNLFFDKVAYEIDNNKLQME LVPERLRGETASFDIEANGKVYIEKGRRITARHIRLLEKDGIERIEVPVEYIAGKVLAKDYIDVGTGEVIAMANMELSLD LLAKLSQAGHKHIETLFTNDLDHGPYMSETLRVDPTSDRLSALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAV GRMKFNRSLLREEIEGSGILSKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDDVVTDEIHYLSAIEEGNYVIAQANTNLDEEGHFIDELVTCRNKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIHYVLVAGGIEAEKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQEEVSKLREFIQKAYDLGNDVRQKVDLTTFTDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLK LGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 96 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 95 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 95 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 74 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 71 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| Ser39006_0778 | YP_008521160.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
