Gene Information

Name : LY180_12590 (LY180_12590)
Accession : YP_008565599.1
Strain : Escherichia coli LY180
Genome accession: NC_022364
Putative virulence/resistance : Virulence
Product : carboxysome shell protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2645807 - 2646142 bp
Length : 336 bp
Strand : -
Note : ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAACGGTCCCGTTCTGGACCCTGATAAAGAGGAAAGCACAATGGAAGCATTAGGAATGATCGAAACCCGGGGCCTGGT
TGCACTGATTGAGGCTTCTGACGCGATGGTGAAAGCTGCGCGCGTCAAGCTGGTTGGTGTTAAGCAGATTGGCGGCGGCC
TGTGTACTGCCATGGTTCGTGGTGATGTTGCAGCCTGTAAAGCCGCGACCGATGCAGGTGCCGCAGCGGCACAGCGTATC
GGCGAGCTGGTATCTGTACACGTTATCCCGCGTCCGCACGGCGACCTGGAAGAAGTCTTCCCGATCGGCCTGAAAGGCGA
TAGCAGCAACCTGTAA

Protein sequence : 
MNGPVLDPDKEESTMEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRI
GELVSVHVIPRPHGDLEEVFPIGLKGDSSNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-14 62
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-14 61
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 1e-12 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LY180_12590 YP_008565599.1 carboxysome shell protein VFG1596 Protein 6e-15 62
LY180_12590 YP_008565599.1 carboxysome shell protein VFG1597 Protein 2e-14 61
LY180_12590 YP_008565599.1 carboxysome shell protein VFG1598 Protein 5e-13 56