|
Name : DIP0099 (DIP0099) Accession : NP_938496.1 Strain : Corynebacterium diphtheriae NCTC13129 Genome accession: NC_002935 Putative virulence/resistance : Unknown Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 81172 - 81756 bp Length : 585 bp Strand : - Note : Similar to Streptomyces coelicolor RNA polymerase sigma factor SCI11.12c TR:Q9S2A7 (EMBL:AL096849) (185 aa) fasta scores: E(): 2.8e-25, 47.36% id in 171 aa, and to Bacillus subtilis RNA polymerase sigma factor SigW SW:SIGW_BACSU (Q45585) (187 aa) fasta sc DNA sequence : GTGACCGCTGTAGAGTTATTGGTCATGGATCCCGATGATTTGCTCGTCGCGGTTGCTTCTGGTGACCAAGCGGCTTTCGC GCAGCTTTATGACCAGCTCGCGCCCTATGTTTTAGGCCTGAGCACTCAGGTGATTCATGATCGTGCGCAGGCAGAGGAAG TAACCCAGGAGGTTTTTGTCGAGGTGTGGCGCACTGCGCCGAGTTTCGACGCCTCCCGTGGTTCGGCACGGTCGTGGATT TTGCGGTTGGCTCGGTCGCGGGCTATTGATCGCGTTCGTTCTGATATTGCTTCGAAAAAGCGCGATACCACTGATTTTCT CCATAGTGCCACCACATGGTGTGCCGCTGAGGAGGAGGCGGTGGAGTCTTTGGAGTCGCAGCAGGTTCGTGCGCTTGTCG ATTCCATTGGCGAGCCACACCGGACGGCCATTATGTTGTCGTATTTCCAAGGTCTTACTCATAGCGAGATTGCAGAGGCC ACGGGCGTTCCGTTGGGAACAGCGAAAACACGGCTACGCGACGGCTTGAAAAAACTACGTCAGATTGTTCACCCCCATTT ATCTGCGACGGGAGCAGCACGATGA Protein sequence : MTAVELLVMDPDDLLVAVASGDQAAFAQLYDQLAPYVLGLSTQVIHDRAQAEEVTQEVFVEVWRTAPSFDASRGSARSWI LRLARSRAIDRVRSDIASKKRDTTDFLHSATTWCAAEEEAVESLESQQVRALVDSIGEPHRTAIMLSYFQGLTHSEIAEA TGVPLGTAKTRLRDGLKKLRQIVHPHLSATGAAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sigD | YP_005124365.1 | ECF-family sigma factor D | Not tested | Not named | Protein | 1e-75 | 100 |
| DIP0099 | NP_938496.1 | RNA polymerase sigma factor | Not tested | Not named | Protein | 2e-79 | 100 |
| sigK | YP_005682421.1 | ECF family sigma factor K | Not tested | PiCp 2 | Protein | 8e-55 | 76 |
| sigK | YP_005684512.1 | ECF family sigma factor K | Not tested | PiCp 2 | Protein | 7e-57 | 75 |
| sigK | YP_005680331.1 | ECF family sigma factor K | Not tested | PiCp 2 | Protein | 2e-55 | 74 |
| sigK | YP_003782453.1 | ECF family sigma factor K | Not tested | PiCp 2 | Protein | 9e-57 | 74 |
