Gene Information

Name : catR (CMM_0089)
Accession : YP_001220828.1
Strain : Clavibacter michiganensis NCPPB 382
Genome accession: NC_009480
Putative virulence/resistance : Unknown
Product : LacI family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1609
EC number : -
Position : 131048 - 132076 bp
Length : 1029 bp
Strand : +
Note : putative transcriptional regulator, LacI family (AAP57290.1| CatR [Clavibacter michiganensis subsp. michiganensis]; NP_826160.1| putative LacI-family transcriptional regulator [Streptomyces avermitilis MA-4680]). InterPro: Periplasmic binding proteins and

DNA sequence : 
ATGGAGGCACAGACCGCAGGACGCGCTCCGACATTGCGGGACATCGCGCGGATCGCGGGGGTGTCTGTTCCGACGGTGTC
GAAGGTCCTCAATGGCCGAGGCGATGTATCGGCTGAGACGCGTGAGCGTGTGCAGGAGGCGACGGCGCGGGTCGGATATC
GACGCATGCCCTCCGCGGCCGTCGACGCGCTCATCGCGGAGCAGCTGGTCGACCTCGTCCTTCCCGCGGTAGGTGATTCC
TGGGCGAGCGCGCTGATCGGCGGTGTCGAGCGCGTCGCCGCGCAGAATTCTCTCGATCTGGTCATCATCATGGTCCGCGC
AGGCGAATCGCAGGGCCGGTCATGGGTGGAGCGGCTCGTCGACCATCGATCGCGTGGCGCACTGATCGCGGTTGTGCAGC
CAACCGCCTCCGAACGACGACTCCTCGAGCGGGCACGGATTCCCTTCGTGCTCATCGACCCTGCCGGTACCCCTGAGCGC
GCTGCCCCGAGTGTCGGAGCATCGAACTGGGCAGGAGGGGCCGATGCCGCGAGCTTCCTTCTCGATCGTGGACACACCTC
CTTCGCGGTGGTTGCCGGAGACCCTCATTCGCTGAACTGCCGCGAGCGGGCAGGAGGGTTCTTGTCCCGAATCCGCGAAC
TTCTGCCCGATTCGAGGCCCACTGTGCTGTACGGCGGATGGCTGATGGAGACGACAGCTCAGGTGGTAGCGGAGCTCTTG
GGGTCACCCTCCCGACCCACCGCCGTCTTCGCGTGCAACGACAACATGGCGCTCGGTGTGTACGCAGCCGCCCATGCCCT
CGAGCTGCGCATACCCGAACAGCTGAGCGTCATCGGATTCGATGATCTGGTGGAGGCTCGACTGGCATCGCCGCCGCTCA
CCACCGTCCGGCAACCCGTTCCAGAGATCGGCGCCGCCGCGCTGCGCAGCCTGCTGGATCTCCGAGGGGGGTATCCGGTG
GCCCGTCGACTCGAGCTCGCCACCGAGCTCATCGCCCGAGACTCGGTGTCCTCGCCTCCACGAGCATGA

Protein sequence : 
MEAQTAGRAPTLRDIARIAGVSVPTVSKVLNGRGDVSAETRERVQEATARVGYRRMPSAAVDALIAEQLVDLVLPAVGDS
WASALIGGVERVAAQNSLDLVIIMVRAGESQGRSWVERLVDHRSRGALIAVVQPTASERRLLERARIPFVLIDPAGTPER
AAPSVGASNWAGGADAASFLLDRGHTSFAVVAGDPHSLNCRERAGGFLSRIRELLPDSRPTVLYGGWLMETTAQVVAELL
GSPSRPTAVFACNDNMALGVYAAAHALELRIPEQLSVIGFDDLVEARLASPPLTTVRQPVPEIGAAALRSLLDLRGGYPV
ARRLELATELIARDSVSSPPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catR YP_001220828.1 LacI family transcriptional regulator Not tested chp/tomA region Protein 1e-153 100