Gene Information

Name : tomA (CMM_0090)
Accession : YP_001220829.1
Strain : Clavibacter michiganensis NCPPB 382
Genome accession: NC_009480
Putative virulence/resistance : Virulence
Product : tomatinase, endo-1,4-beta-glycosidase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG3693
EC number : -
Position : 132170 - 133801 bp
Length : 1632 bp
Strand : -
Note : tomatinase, glycosyl hydrolase, family 10 (ZP_00192175.3| COG3693: Beta-1,4-xylanase [Kineococcus radiotolerans SRS30216]; CAA10112.1| tomatinase [Fusarium oxysporum f. sp. lycopersici]). , pfam00331,Glyco_hydro_10, Glycosyl hydrolase family 10.; High con

DNA sequence :
ATGAGAACACTGACATCCGCAGCCCTCGCGACCACCGTCGCTCTAGGGCTGACACTGATCGCGGCAGTCCCCGCGAGGGC
ATCGACCGGCGATGGACCTACGCTGCGTGAGCTGGCCGAGCCGGCCGGTCTCACGATCGGATCCGGCTCGATCAAGGCCG
CGGAGTGGACGAAGGACGACCGCCCGTCGAACTACCTGACCGATCCGCGGTTCGCCGACACCCTCGCCGAACAGTTCAAT
GGCCTTTCTCCCGAGAACGAGATGAAATGGGCCTTCACGCAACCCGAAGAGGGTGTGTACGACTTCGCTGGGCTTGACCG
ACTGGTCGCCTTCGCCGAAGAGCACGACATGGCGGTAAAGGGCCATGGTCTGATCTCCAGCTGCTGCGATCCGGAGTACG
TGACCTCGATCACGGATGCCGGCGAGATGCGGGCGGCGATGACAGAGCACTTCACCACTGTGATGGAGCGTTACGACGGA
AGGATCGATCGGTGGGACGTTGTCTCTGAAGCGCTCGAGTCGCAAGGTACGACGCTTCAAAGCACCACCTTCTTTAAGGT
CCTCGGTCCCGGGTACATCGCTGACGCCTTCCGCATCGCGCGAGCAGCCGACCCGGACGCGAAGCTCTTCATCAACGAGA
ACCTGGTCGAGTTCGATGCGGCGAAGCGGCAGGCGTTCCTCGACCTGCTCACCGGGCTGGTCGCCGAAGGCGTACCCGTC
GACGGAGTCGCGCTCCAGATGCACGAGACGTTCGCCGGCCCTCTCCCCGGAGTGATCACCGAGATGGTCGACTCGTACCG
TGCGCTTGGTCTTGACGTCGAGATCGCCGAGCTCGATGTGCACACCTACGACCCCGTCTCGCAGGCGACCATCTACGGTG
ACGTCGTAGCCGAGGCTCTCGCGGCCGGCGTGACGGAGATCAGCACTTGGGGCTTCACGGACAAGCACCTCTACACCTGG
CTCCCGGGAGCCAAGCCACTGATCTTCGACGAGGAGTACGGCCCCAAGCCCGCCTACTTCGCCGTTCGCGACGCACTCCA
GCAGTTCGTCACGCCCACCGCTGCCCCCGGCGTGGCCAGCCTCTCCAACACGGGCCGAAAGTCCGGGCTGAGCGACGGTG
ATTACGACATCAAGATGAACCTCACCAAGGGCGCGCCGGGCAGCTACTACCGCCTCTACGAGAACGATGTCCTCGTGTCC
TCGCAGCGCCTCGACTCCCTCGCGACCCCGCGGCAGTCGGCGACTACGTCCTTCTCCGGGAAGGCGGAGGGGAAGTACAG
GTACCGCGCGGAGCTCATCAACTCACAGGGCGTCACGTCGACGAAGACCACCACGGTGCTGGTGAAGCACCTCGCACCCA
GCAGACCGGTGGTCTCGGTCGACAACAGGGACGGAGACGGCACCTTCGTCGCCACGGCGACGCTGAAGTCAGGGATCAAC
GCCACCTCCTACGCCTTCAAGCTGGACGGCCGGATCGTCGGGACGGGGCCCCTGACGGCTGCGACGCCCAACAAGCAGAC
TGCGAAGGTGTCCCTCACCGGAATCGCCGCTGGTCGGCACGCTCTCACCGCCGTTTTCACCAATACGAAGGGATCCACCG
AGTCGAGGTCGGTCACCGTCAGGGTGCGCTAG

Protein sequence :
MRTLTSAALATTVALGLTLIAAVPARASTGDGPTLRELAEPAGLTIGSGSIKAAEWTKDDRPSNYLTDPRFADTLAEQFN
GLSPENEMKWAFTQPEEGVYDFAGLDRLVAFAEEHDMAVKGHGLISSCCDPEYVTSITDAGEMRAAMTEHFTTVMERYDG
RIDRWDVVSEALESQGTTLQSTTFFKVLGPGYIADAFRIARAADPDAKLFINENLVEFDAAKRQAFLDLLTGLVAEGVPV
DGVALQMHETFAGPLPGVITEMVDSYRALGLDVEIAELDVHTYDPVSQATIYGDVVAEALAAGVTEISTWGFTDKHLYTW
LPGAKPLIFDEEYGPKPAYFAVRDALQQFVTPTAAPGVASLSNTGRKSGLSDGDYDIKMNLTKGAPGSYYRLYENDVLVS
SQRLDSLATPRQSATTSFSGKAEGKYRYRAELINSQGVTSTKTTTVLVKHLAPSRPVVSVDNRDGDGTFVATATLKSGIN
ATSYAFKLDGRIVGTGPLTAATPNKQTAKVSLTGIAAGRHALTAVFTNTKGSTESRSVTVRVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tomA YP_001220829.1 tomatinase, endo-1,4-beta-glycosidase Not tested chp/tomA region Protein 0.0 100
tomA AAW49296.1 putative tomatinase Virulence Not named Protein 5e-144 60