Gene Information

Name : RTCIAT899_CH05485 (RTCIAT899_CH05485)
Accession : YP_007333051.1
Strain : Rhizobium tropici CIAT 899
Genome accession: NC_020059
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1116733 - 1117410 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGATTCTGATCATCGAAGACGATCTTGAAGCGGCGGCTTACCTTACCAAGGCGTTTCGCGAGGCCGGCATCGTTGC
CGATCACGCGAGCGACGGCGAGAGCGGTCTCTTCATGGCCACCGAGAACACCTATGATGTCGCCATCATCGATCGCATGC
TTCCGCGTCGGGACGGGCTGTCGGTCATCAGCGAATTGCGCCGCAAGGGCGTGCATACGCCGGTTTTGATCCTTTCCGCG
CTCGGCCAGGTCGATGATCGTGTCACCGGCCTGCGCGCCGGCGGCGACGACTACCTGCCCAAGCCCTATGCCTTCAGCGA
GCTTCTTGCCCGTGTCGAAGTACTCGGCCGCCGCAAGGGAACGCCGGAGCAGGACGTCCTCTATCGCGTCGGCGATCTGG
AACTGGACCGCCTTTCGCATGAGGTGCGCCGTGGCGGCAAGGAAATCCTGCTGCAGCCGCGCGAGTTCCGCCTGCTGGAA
TATCTGATGAAGAATGCAGGCCAGGTCGTCACCCGCACCATGCTGCTCGAAAATGTCTGGGATTATCATTTCGACCCGCA
GACGAACGTCATCGACGTCCACGTTTCGCGCCTGCGCTCCAAGATCGAGAAGGATTTCAGCCAGCCGTTGCTGAAGACCA
TTCGTGGCGCCGGATACATGATCAAGGACGAGGGATGA

Protein sequence : 
MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMATENTYDVAIIDRMLPRRDGLSVISELRRKGVHTPVLILSA
LGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVLYRVGDLELDRLSHEVRRGGKEILLQPREFRLLE
YLMKNAGQVVTRTMLLENVWDYHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMIKDEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0125 Protein 5e-46 47
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0347 Protein 2e-46 47
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0083 Protein 1e-44 46
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0111 Protein 3e-48 46
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0308 Protein 4e-41 45
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0197 Protein 3e-43 45
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR BAC0638 Protein 2e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR VFG0596 Protein 1e-38 42
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR VFG1389 Protein 1e-32 42
RTCIAT899_CH05485 YP_007333051.1 transcriptional activator protein CopR VFG1390 Protein 7e-37 41