Gene Information

Name : Psyr_1127 (Psyr_1127)
Accession : YP_234219.1
Strain : Pseudomonas syringae B728a
Genome accession: NC_007005
Putative virulence/resistance : Virulence
Product : heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1276339 - 1277016 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence :
ATGCGCGTGCTGATTATCGAAGACGAAGAGAAAACCGCCGACTACCTGCGTCGGGGCCTGACCGAACAGGGCTATGCCGT
GGACGTGGCGCGCGACGGGATCGAAGGCCTGCACCTGGCGCTGGAGAATGACCATGCGATCGTCATTCTCGATGTGATGC
TCCCGGGCCTGGATGGTTTTGGTGTGTTGCGTGCGTTGCGCGCGCGCAAACAGACACCCGTGATCATGCTGACCGCACGC
GAGCAGATCGACGACCGCATTCGCGGCCTGCGCGAAGGCGCGGATGATTACCTGGGCAAACCGTTTTCCTTTCTGGAACT
GGTCGCCCGTCTGCAGGCCCTGACCCGGCGCAGCGGTGGCCATGAACCGATACAGATCACCATCGCCGACCTGTGGATAG
ACCTGATCAGCCGCAAGGCGACCCGTGCCGGCCTGCGCCTGGACCTGACCGCCAAGGAGTTTTCGCTGCTCAGCGTGCTG
GCCCGACGTCAGGGCGACATTCTCTCCAAGACATCCATCGCCGAGATGGTCTGGGACATCAACTTCGACAGCGATACCAA
TGTGGTCGAAGTCGCGATCAAGCGCTTGCGGGCCAAGCTCGATGGCCCTCACGAGCACAAGCTGCTGCACACCATTCGCG
GCATGGGCTACGTGCTGGAGAACCGCAGTGCGGGTTGA

Protein sequence :
MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGFGVLRALRARKQTPVIMLTAR
EQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVL
ARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLENRSAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-54 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-54 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0197 Protein 4e-58 57
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0083 Protein 1e-55 55
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0125 Protein 5e-61 55
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0638 Protein 1e-48 53
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0111 Protein 5e-56 52
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0347 Protein 1e-50 50
Psyr_1127 YP_234219.1 heavy metal response regulator BAC0308 Protein 9e-53 49
Psyr_1127 YP_234219.1 heavy metal response regulator CP000675.2.gene1535. Protein 3e-33 41
Psyr_1127 YP_234219.1 heavy metal response regulator HE999704.1.gene1528. Protein 8e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyr_1127 YP_234219.1 heavy metal response regulator VFG0596 Protein 8e-55 54
Psyr_1127 YP_234219.1 heavy metal response regulator VFG1389 Protein 1e-39 47
Psyr_1127 YP_234219.1 heavy metal response regulator VFG1386 Protein 7e-37 45