Gene Information

Name : silR (APECO1_O1R110)
Accession : YP_001481464.1
Strain :
Genome accession: NC_009838
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional activator CusR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 123024 - 123704 bp
Length : 681 bp
Strand : -
Note : putative transcriptional regulatory protein; silver resistance; response regulator in two-component regulatory system with CusS; regulates the copper efflux system

DNA sequence :
ATGAAAATATTGATCGTCGAAGACGAAATTAAAACAGGTGAATATCTCAGCAAAGGGCTTACAGAGGCAGGGTTCGTAGT
GGATCACGCTGATAATGGTCTTACCGGATATCATCTCGCCATGACAGCCGAGTATGATTTAGTCATTCTGGATATCATGC
TACCTGATGTGAACGGCTGGGATATCATCCGCATGCTGCGCACTGCCGGAAAGGGTATGCCGGTCTTACTGCTGACAGCC
CTCGGCACGATCGAACATAGGGTCAAAGGACTGGAACTGGGTGCGGACGATTATCTGGTTAAACCCTTTGCGTTTGCCGA
ACTGCTCGCCCGGGTGAGAACCCTTCTGAGGCGGGGAAACACGATGATCACGGAAAGCCAGTTTAAGGTGGCTGACCTCT
CGATTGATCTCGTATCCAGAAAAGTCAGTCGCGCCGGAAACCGCATTGTGCTCACCAGTAAAGAGTTCAGCCTGCTGGAA
TTCTTCATTCGCCATCAGGGAGAGGTTCTTCCCCGCTCCCTGATTGCCTCTCAGGTCTGGGACATGAATTTTGACAGCGA
CACTAATGCGATCGATGTCGCAGTAAAGCGACTCCGCGCTAAAATAGACAACGATTACGAGACAAAGCTGATCCAGACAG
TCCGGGGCGTGGGCTACATGCTGGAGGTCCCGGATGCATAG

Protein sequence :
MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWDIIRMLRTAGKGMPVLLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNTMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLE
FFIRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEVPDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-55 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0347 Protein 1e-94 93
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0111 Protein 1e-95 88
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0083 Protein 5e-71 62
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0638 Protein 4e-65 62
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0197 Protein 1e-65 60
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0308 Protein 3e-62 58
silR YP_001481464.1 DNA-binding transcriptional activator CusR BAC0125 Protein 8e-64 56
silR YP_001481464.1 DNA-binding transcriptional activator CusR HE999704.1.gene1202. Protein 3e-36 41
silR YP_001481464.1 DNA-binding transcriptional activator CusR AE000516.2.gene3505. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
silR YP_001481464.1 DNA-binding transcriptional activator CusR VFG0596 Protein 5e-56 54
silR YP_001481464.1 DNA-binding transcriptional activator CusR VFG1390 Protein 1e-42 43