Gene Information

Name : copR (T1E_1233)
Accession : YP_006531882.1
Strain : Pseudomonas putida DOT-T1E
Genome accession: NC_018220
Putative virulence/resistance : Virulence
Product : two component heavy metal response
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1420632 - 1421312 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAGGCCCGCACCGGCCAGTACCTGAGCCAAGGCCTGAGCGAGGCCGGCTTTGCCAC
CGAGTTGGCTACCGATGGCGAGACCGGCCAGTTCCTCGCCCTGACCGGCGACCACGACCTGCTGATCCTCGACGTGATGC
TGCCTGGCCGCGACGGCTGGCAGATTCTTCAGGCCGTGCGCCAGGCAGGCCTGGATACGCCAGTGCTGTTCCTGACCGCC
CGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACTGGGCGCCGACGACTACCTGGTCAAGCCGTTCGCCTTTTCCGA
ACTGCTGGCCCGGGTACGCAGCCTGCTGCGCCGTGGCACCAGCCCGAGCCAGGACACGACCCTGAGCCTGGCCGACCTGC
GCCTGGACCTGATCCGCCGCCGCGCCGAGCGCGCCGGGCAGCGCATCGACCTGACCGCCAAGGAATTCTCACTCCTTGAG
CTGCTGCTGCGCCGCCAGGGTGAGGTGCTGCCAAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAACTTCGACAGTGA
CACCAATGTGATCGAAGTGGCCATCCGCCGCCTGCGCCTGAAGATCGACGACCCGCACCCCAACAAGCTGATCCACACCG
TACGGGGCATGGGTTACGTACTCGAAGAGCGCGCCGAGTGA

Protein sequence : 
MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGWQILQAVRQAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGTSPSQDTTLSLADLRLDLIRRRAERAGQRIDLTAKEFSLLE
LLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEERAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-49 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-48 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_006531882.1 two component heavy metal response BAC0638 Protein 2e-57 70
copR YP_006531882.1 two component heavy metal response BAC0083 Protein 3e-63 68
copR YP_006531882.1 two component heavy metal response BAC0197 Protein 6e-59 65
copR YP_006531882.1 two component heavy metal response BAC0111 Protein 1e-61 63
copR YP_006531882.1 two component heavy metal response BAC0308 Protein 2e-59 62
copR YP_006531882.1 two component heavy metal response BAC0125 Protein 2e-57 60
copR YP_006531882.1 two component heavy metal response BAC0347 Protein 7e-55 60
copR YP_006531882.1 two component heavy metal response NC_002516.2.879194.p Protein 3e-28 41
copR YP_006531882.1 two component heavy metal response HE999704.1.gene1528. Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_006531882.1 two component heavy metal response VFG0596 Protein 5e-50 55
copR YP_006531882.1 two component heavy metal response VFG1390 Protein 2e-34 44
copR YP_006531882.1 two component heavy metal response VFG1389 Protein 7e-30 43