Gene Information

Name : ssaM (t1281)
Accession : NP_805084.1
Strain : Salmonella enterica Ty2
Genome accession: NC_004631
Putative virulence/resistance : Virulence
Product : pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1347709 - 1348077 bp
Length : 369 bp
Strand : +
Note : corresponds to STY1707 from Accession AL513382: Salmonella typhi CT18

DNA sequence :
ATGGATTGGGATCTCATTACTGAACGTAATATTCAGCTTTTTATTCAATTAGCAGGATTAGCTGAACGGCCTTTAGCAAC
CAATATGTTCTGGCGGCAAGGACAATATGAAACCTGTCTAAACTATCATAATGGTCGTATTCACTTATGTCAGATACTCA
AGCAAACCTTCTTAGACGAAGAACTGCTTTTTAAAGCGTTGGCTAACTGGAAACCCGCAGCGTTCCAGGGTATTCCTCAA
CGATTATTTTTGTTGCGCGATGGGCTTGCAATGAGTTGTTCTCCACCTCTTTCCAGCTCCGCCGAGCTCTGGTTACGATT
ACATCATCGACAAATAAAATTTCTGGAGTCGCAATGCGTTCATGGTTAG

Protein sequence :
MDWDLITERNIQLFIQLAGLAERPLATNMFWRQGQYETCLNYHNGRIHLCQILKQTFLDEELLFKALANWKPAAFQGIPQ
RLFLLRDGLAMSCSPPLSSSAELWLRLHHRQIKFLESQCVHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1707 NP_456115.1 putative pathogenicity island protein Virulence SPI-2 Protein 4e-53 100
ssaM NP_805084.1 pathogenicity island protein Virulence SPI-2 Protein 4e-53 100
ssaM NP_460378.1 type III secretion system apparatus protein Virulence SPI-2 Protein 3e-52 99
ssaM YP_216421.1 secretion system apparatus protein SsaM Virulence SPI-2 Protein 6e-52 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaM NP_805084.1 pathogenicity island protein VFG0513 Protein 7e-53 99