Gene Information

Name : HNE_1312 (HNE_1312)
Accession : YP_760030.1
Strain : Hyphomonas neptunium ATCC 15444
Genome accession: NC_008358
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1345454 - 1346161 bp
Length : 708 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGTCGAAACAGAATCCACGACATCGCTGAAAGTCCTCGTCATCGAGGACGACACTGAAATGGCAAGCTTCATCGAGAA
GGTGCTGCTTGACGCTGGACACAAGGTGGAGCGCGCCAGCGATGGCGCTTCCGGTCTGGCAATGGCGCGGGCGTCTGAAT
ATGACGCCCTCATCGTTGACCGGATGCTTCCGGAAAAGGACGGCCTCACCCTGTTGCAGGAATTCCGCGCAGCCGGTGGC
ACAACGCCCGCCCTCTTCCTCTCCGCCCTCGGAGACGTTCAGAACAAGGTGCAGGGCCTTCGCGCCGGCGCTGAGGACTA
TCTGGGCAAGCCCTTTGCCCCGGCAGAACTCGCCGCCCGCGTCGAAGCCCTCGGCCGCCGCCAGACGAATGCCGAGCCGC
CGGTCACGGTGCTCAAGGCAGGCGACCTGGAAATGAACCTCCTGACCCGCAAGGTCACCCGCGCCGGCAAGAAGATCGAC
CTTCAGCCCCGCGAGTTCCGCCTGCTGGAATATCTGATGCGCCATGCCGGCCAGGTCGTGACGCGCACGATGCTGCTGGA
AAAGGTGTGGGACTATAACTTCGATCCCCAGACCAATGTGATCGACGTTCACATCTCCCGCCTGCGCGCAAAGATCGACA
AGGAGTTCGCCGAACCGCTGCTCCAGACCGTTCGCGGCGCCGGATACCGCCTGCAGAGCCAGGGCTAG

Protein sequence : 
MVETESTTSLKVLVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEKDGLTLLQEFRAAGG
TTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQTNAEPPVTVLKAGDLEMNLLTRKVTRAGKKID
LQPREFRLLEYLMRHAGQVVTRTMLLEKVWDYNFDPQTNVIDVHISRLRAKIDKEFAEPLLQTVRGAGYRLQSQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-38 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0638 Protein 4e-41 47
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0083 Protein 9e-49 46
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0125 Protein 4e-46 45
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0347 Protein 2e-46 45
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0197 Protein 3e-43 44
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0111 Protein 1e-47 44
HNE_1312 YP_760030.1 DNA-binding response regulator BAC0308 Protein 1e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HNE_1312 YP_760030.1 DNA-binding response regulator VFG0596 Protein 3e-38 44
HNE_1312 YP_760030.1 DNA-binding response regulator VFG1389 Protein 2e-31 42