Gene Information

Name : ragA (RHE_CH01294)
Accession : YP_468826.1
Strain : Rhizobium etli CFN 42
Genome accession: NC_007761
Putative virulence/resistance : Virulence
Product : two-component response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1341237 - 1341992 bp
Length : 756 bp
Strand : +
Note : similar to ragA (Atu0978) [Agrobacterium tumefaciensstr. C58 ] and SMc02366 [Sinorhizobiummeliloti]; Similar to swissprot:Q8UGQ7; location:bacterial cytoplasm Psort-Score: 0.3052

DNA sequence : 
ATGATCGCGATGAGCGCCGCTCCGCAGCCAGATGCTTTGAGCCTTGCCGAAACGCAGCCGGTGGGTAATGTCGGCCGCAT
GAAGATTCTCATCATCGAAGATGATCTCGAAGCCGCCGCCTACCTTACGAAAGCCTTTCGCGAGGCAGGCATCGTCGCCG
ACCACGCCAGCGACGGTGAGGCCGGTCTGTTCATGGGGTCGGAAAATACCTATGACGTCATCGTCATCGACCGCATGCTG
CCGCGCCGCGATGGCCTCTCCGTTATCAGCGAGCTGCGCCGCAAGGGCATCCATACGCCGGTGCTCATCCTCTCCGCGCT
TGGCCAGGTCGATGATCGGGTGACCGGTCTTCGTGCCGGCGGCGACGATTACCTGCCGAAGCCTTATGCCTTCAGCGAAT
TGCTGGCGCGTGTCGAGGTGCTCGGCCGCCGCAAGGGCACGCCGGAGCAGGACGTCGTCTATCGCGTCGCTGATCTTGAA
CTCGACCGGCTCTCCCACGAGGTCCGCCGCGGCGGCAAGGAAATCCCGCTGCAGCCGCGCGAATTCCGCCTGCTCGAATA
TCTGATGAAGAATGCCGGCCAGGTGGTGACCCGCACCATGCTGCTCGAAAATGTCTGGGACTACCACTTCGACCCGCAGA
CCAACGTCATCGACGTCCATGTCTCGCGCCTACGCTCGAAGATCGAGAAGGACTTCAGCCAGCCGCTCCTGAAAACCATC
CGGGGCGCGGGGTACATGATCAAGGACGAGGGATGA

Protein sequence : 
MIAMSAAPQPDALSLAETQPVGNVGRMKILIIEDDLEAAAYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRML
PRRDGLSVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVVYRVADLE
LDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTI
RGAGYMIKDEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_468826.1 two-component response regulator protein BAC0125 Protein 7e-47 47
ragA YP_468826.1 two-component response regulator protein BAC0347 Protein 1e-46 46
ragA YP_468826.1 two-component response regulator protein BAC0111 Protein 3e-49 46
ragA YP_468826.1 two-component response regulator protein BAC0308 Protein 2e-42 45
ragA YP_468826.1 two-component response regulator protein BAC0083 Protein 2e-45 44
ragA YP_468826.1 two-component response regulator protein BAC0197 Protein 6e-43 44
ragA YP_468826.1 two-component response regulator protein BAC0638 Protein 2e-37 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_468826.1 two-component response regulator protein VFG1389 Protein 2e-33 42
ragA YP_468826.1 two-component response regulator protein VFG0596 Protein 1e-39 41
ragA YP_468826.1 two-component response regulator protein VFG1390 Protein 5e-38 41