Gene Information

Name : SG1308 (SG1308)
Accession : YP_454988.1
Strain : Sodalis glossinidius morsitans
Genome accession: NC_007712
Putative virulence/resistance : Virulence
Product : secretion system apparatus protein SsaU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 2173283 - 2174347 bp
Length : 1065 bp
Strand : +
Note : member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli

DNA sequence :
ATGGGTGAGAAAACTGAAAAACCGACCGAAAAGCGACGTCGCGACCGCCGTAAAGAAGGACAGGTGATAAAAAGCAATGA
AATCACCTCCGGCGTTCAACTGGCCGCGATACTCCTTTTCTGGCACCTGTTCGCCGAGGCGGTGATAGAGCGGACATCGA
CGCTTATCGTCTTGTCCATAAGCCTGATTAATCGACCTTTCCTGTTTGCCTTCAATCAGCTGTTGCATGTTGTGCTATCG
TCGGCCGGATTGTTGTTCGCCTTATTTGGCGGTATGTTAGCGCTAGCCACCGTTGGCAGCGTGCTGCTACAGATAGGGTT
CGTCCTGGCCAGTAAAGCCGTGGGCATCAAGGGACGTCGCATTAATCCGGTCAGTAATCTCAAACAAATTTTTTCGCTCC
ACAGCCTGGTGGAATTGTGTAAATCCACCGGTAAGGTCGTGGTGTTGACGCTGATTTTTGCCGGCCTGTTTTATTATTAT
GCAACGACATTTCAGGCGCTGCCGTTTTGCAATAGCCGTTGTGCGTTGCCGCTGTTTACCACTTTCACTCGCTGGATGTG
GTTTGGATTAATCGGTTTTTATATTGTCCTTGGAGTACTCGATTACGCTTTTCAGGCCCATAACACCCTGAAGCAGCAAC
GAATGAGCAAGGAGGAAGTAAAACAGGAATATAAGGATGCGGAAGGCGATCCCTACATGAAACAACGCCGGCACGAAATG
CAGCATGAGATCCAAAGCGGTAGTCTTGCGCACAATGTTAAACGATCGGCCGTCGTGATACGTAACCCGACCCATATTGC
GATTTGTCTGGGGTATCATCCAATCGATATGCCGGTGCCGCGTGTGCTGGACAAAGGTACGGCCGAACGTGCAGGACAAA
TTGTTGACCTGGCACAACGCGCCGCCGTGCCGGTTGTGGAAAATATCCCTCTCGCGCGGGCGCTTTTCCAGCATGTCGGC
TGCGGCGACAGAATACCGGAAACGCTGTTTGAACCGGTAGCGGTACTGTTGCGTATGGTTCTGGAAATTGACTATCATTG
CGATGAAAAAACGGTAAAATCATGA

Protein sequence :
MGEKTEKPTEKRRRDRRKEGQVIKSNEITSGVQLAAILLFWHLFAEAVIERTSTLIVLSISLINRPFLFAFNQLLHVVLS
SAGLLFALFGGMLALATVGSVLLQIGFVLASKAVGIKGRRINPVSNLKQIFSLHSLVELCKSTGKVVVLTLIFAGLFYYY
ATTFQALPFCNSRCALPLFTTFTRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQEYKDAEGDPYMKQRRHEM
QHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRVLDKGTAERAGQIVDLAQRAAVPVVENIPLARALFQHVG
CGDRIPETLFEPVAVLLRMVLEIDYHCDEKTVKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 9e-96 59
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 4e-96 59
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 4e-96 59
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 6e-96 59
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 3e-95 58
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 8e-77 51
escU AAC38372.1 EscU Virulence LEE Protein 1e-55 41
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 2e-55 41
escU AAC31525.1 L0046 Virulence LEE Protein 1e-55 41
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 2e-55 41
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 1e-55 41
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 2e-55 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SG1308 YP_454988.1 secretion system apparatus protein SsaU VFG0522 Protein 4e-96 59
SG1308 YP_454988.1 secretion system apparatus protein SsaU VFG0824 Protein 7e-56 41
SG1308 YP_454988.1 secretion system apparatus protein SsaU VFG0718 Protein 8e-56 41