Gene Information

Name : STBHUCCB_13720 (STBHUCCB_13720)
Accession : YP_005216930.1
Strain : Salmonella enterica P-stx-12
Genome accession: NC_016832
Putative virulence/resistance : Virulence
Product : Secretion system apparatus protein ssaV
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1347035 - 1349080 bp
Length : 2046 bp
Strand : +
Note : similar to secretion system apparatus protein SsaV PRK12720; similar to Secretion system apparatus protein ssaV of Gammaproteobacteria UniRef RepID=SSAV_SALTY

DNA sequence :
ATGCGTTCATGGTTAGGTGAGGGAATCAGGGCGCAACAGTGGCTCAGTGTATGCGCGGGTCGTCAGGATATGGTTCTGGC
GACGGTGTTATTAATCGCTATCGTGATGATGCTGTTACCTTTGCCGACCTGGATGGTTGATATCCTGATTACTATCAACC
TTATGTTTTCAGTGATCCTGCTTTTAATTGTTATTTATCTTAGTGACCCTCTCGATTTATCGGTATTTCCGTCTTTATTA
CTTATTACTACATTATATCGTTTGTCACTCACAATCAGCACATCACGGCTGGTACTGTTACAACATAATGCCGGTAATAT
TGTGGATGCTTTCGGTAAGTTTGTCGTAGGAGGAAATCTCACCGTTGGGTTGGTCGTATTTACCATCATTACTATTGTGC
AATTTATTGTCATTACAAAAGGTATCGAGAGGGTGGCGGAAGTTAGCGCACGTTTCTCGCTTGATGGGATGCCAGGCAAA
CAAATGAGTATCGATGGCGATTTGCGTGCCGGAGTTATCGATGCAGACCATGCCCGTACATTAAGACAGCACGTCCAGCA
GGAAAGCCGTTTTCTCGGTGCGATGGACGGTGCAATGAAATTTGTTAAAGGCGATACGATTGCCGGTATTATTGTTGTTC
TGGTGAACATTATCGGCGGTATTATTATCGCTATCGTACAATATGATATGTCGATGAGTGAGGCTGTTCACACTTATAGC
GTACTGTCAATCGGAGATGGTTTATGTGGGCAAATTCCATCGCTGCTGATTTCCCTTAGCGCGGGAATTATTGTCACCCG
TGTTCCGGGTGAGAAACGCCAGAACCTGGCGACAGAGTTGAGTTCTCAAATTGCCAGACAACCTCAGTCGCTCATATTAA
CCGCTGTGGTTTTAATGCTCCTCGCTTTAATTCCTGGCTTTCCTTTTATCACTCTCGCTTTCTTTTCAGCGTTGTTAGCA
TTGCCAATTATCCTCATTCGCCGCAAAAAGTCTGTGGTTTCCGCAAATGGCATCGAAGCGCCGGAAAAAGATAGTATGGT
TCCCGGCGCATGTCCTCTAATCTTACGTCTTACCCCGACGTTACATTCTGCCGACCTGATTCGTGATATTGATGCCATGA
GATGGTTTTTATTTGAGGATACCGGCGTCCCTCTCCCTGAGGTGAATATTGAGGTTTTGCCTGAACCCACCGAAAAATTG
ACGGTACTGCTATATCAGGAACCCGTGTTTAGTTTATCTATTCCCGCCCAGGCGGATTATTTATTGATAGGCGCGGACGC
TAGTGTGGTGGGTGACAGCCAGACGTTACCGAACGGAATGGGGCAGATCTGTTGGCTTTCAAAAGACATGGCTCATAAGG
CGCAAGGTTTTGGACTGGACGTTTTCGCGGGCAGCCAACGTATCTCTGCCTTATTAAAATGTGTCCTGCTTCGGCATATG
GGAGAGTTTATTGGTGTTCAGGAAACGCGTTATCTAATGAATGCGATGGAAAAAAACTACTCTGAACTGGTGAAAGAACT
TCAGCGCCAGTTACCCATTAATAAAATCGCTGAAACTTTGCAACGGCTTGTATCAGAGCGGGTTTCTATTAGAGATTTAC
GTCTTATTTTTGGCACATTAATTGACTGGGCGCCACGCGAAAAAGATGTCCTGATGTTGACAGAATATGTCCGTATCGCG
CTTCGCCGTCATATTCTGCGTCGTCTTAATCCGGAAGGAAAACCGCTGCCGATTTTGCGGATCGGCGAAGGTATTGAAAA
CCTCGTGCGTGAATCCATTCGCCAGACGGCAATGGGGACCTATACTGCGCTGTCGTCTCGTCATAAGACGCAGATCCTGC
AACTTATTGAGCAGGCGCTGAAGCAGTCAGCCAAATTATTCATTGTCACTTCTGTCGACACCCGCCGTTTCTTGCGAAAA
ATTACAGAAGCCACCTTGTTCGACGTACCGATTTTGTCATGGCAGGAATTAGGAGAGGAGAGCCTTATACAAGTGGTAGA
AAGTATTGACCTTAGCGAAGAGGAGTTGGCGGACAATGAAGAATGA

Protein sequence :
MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIVIYLSDPLDLSVFPSLL
LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK
QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA
LPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKL
TVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIA
LRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRK
ITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaV NP_456114.1 putative type III secretion protein Virulence SPI-2 Protein 0.0 100
ssaV NP_805085.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 0.0 100
ssaV CAA70536.1 secretion system apparatus Virulence SPI-2 Protein 0.0 99
ssaV NP_460379.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 0.0 99
ssaV YP_216422.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 0.0 99
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 3e-134 58
escV AAC38382.1 EscV Virulence LEE Protein 7e-108 49
unnamed AAL06368.1 EscV Virulence LEE Protein 4e-105 48
escV YP_003223476.1 translocator EscV Virulence LEE Protein 1e-107 48
escV CAC81861.1 EscV protein Virulence LEE II Protein 3e-107 48
escV AAC31514.1 L0035 Virulence LEE Protein 1e-107 48
escV ACU09459.1 EscV protein Virulence LEE Protein 1e-107 48
escV YP_003236089.1 putative translocator EscV Virulence LEE Protein 1e-106 48
escV AAK26714.1 EscV Virulence LEE Protein 1e-107 48
escV NP_290269.1 hypothetical protein Virulence LEE Protein 2e-107 48
escV AAL57541.1 EscV Virulence LEE Protein 1e-107 48
ECs4569 NP_312596.1 hypothetical protein Virulence LEE Protein 2e-107 48
escV CAI43875.1 EscV protein Virulence LEE Protein 8e-108 48
escV YP_003232152.1 T3SS structure protein EscV Virulence LEE Protein 2e-107 48
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-98 47
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-99 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STBHUCCB_13720 YP_005216930.1 Secretion system apparatus protein ssaV VFG0514 Protein 0.0 99
STBHUCCB_13720 YP_005216930.1 Secretion system apparatus protein ssaV VFG0729 Protein 4e-108 49
STBHUCCB_13720 YP_005216930.1 Secretion system apparatus protein ssaV VFG0813 Protein 8e-108 48
STBHUCCB_13720 YP_005216930.1 Secretion system apparatus protein ssaV VFG0064 Protein 1e-82 42
STBHUCCB_13720 YP_005216930.1 Secretion system apparatus protein ssaV VFG0384 Protein 2e-80 41