Gene Information

Name : ragA (RHECIAT_CH0001389)
Accession : YP_001977547.1
Strain : Rhizobium etli CIAT 652
Genome accession: NC_010994
Putative virulence/resistance : Virulence
Product : two-component response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1368283 - 1369038 bp
Length : 756 bp
Strand : +
Note : -

DNA sequence :
ATGTTCGCGATGAGCGCCGCTCCGCAGCCAGATGCTTTGAGCCTTGCCGAAACGCAGCCGGTGGGTAATGTCGGCCGCAT
GAAGATTCTCATCATCGAAGATGATCTCGAAGCCGCGGTCTACCTCACGAAAGCCTTTCGCGAGGCGGGCATTGTCGCCG
ACCACGCCAGCGACGGCGAGAGCGGTCTGTTCATGGGATCGGAAAATACCTATGACGTCATCGTCATCGACCGCATGCTG
CCGCGCCGCGACGGTCTCTCCGTCATCAGCGAGCTGCGCCGCAAGGGCGTCCATACGCCGGTGCTCATCCTCTCCGCGCT
TGGCCAGGTCGATGATCGGGTGACCGGTCTTCGTGCCGGTGGCGACGATTACCTGCCGAAGCCCTATGCCTTCAGCGAAT
TGCTGGCGCGTGTCGAGGTGCTCGGCCGCCGCAAGGGAACGCCGGAACAGGATGTCGTCTATCGCGTCGGTGATCTCGAA
CTCGACCGGCTCTCCCACGAGGTGCGCCGCGGCGGCAAGGAAATCCCGCTGCAGCCGCGCGAATTCCGCCTGCTCGAATA
TTTGATGAAAAATGCCGGCCAGGTGGTGACCCGCACCATGCTGCTCGAAAACGTCTGGGACTACCACTTCGACCCGCAGA
CCAATGTCATCGACGTCCATGTCTCGCGCCTGCGCTCGAAGATCGAGAAGGACTTCAGCCAGCCGCTCCTGAAAACCATC
CGGGGCGCGGGGTACATGATCAAGGACGAGGGATGA

Protein sequence :
MFAMSAAPQPDALSLAETQPVGNVGRMKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRML
PRRDGLSVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVVYRVGDLE
LDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTI
RGAGYMIKDEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_001977547.1 two-component response regulator protein BAC0125 Protein 2e-46 47
ragA YP_001977547.1 two-component response regulator protein BAC0347 Protein 4e-46 46
ragA YP_001977547.1 two-component response regulator protein BAC0083 Protein 4e-46 45
ragA YP_001977547.1 two-component response regulator protein BAC0111 Protein 9e-49 45
ragA YP_001977547.1 two-component response regulator protein BAC0308 Protein 4e-42 45
ragA YP_001977547.1 two-component response regulator protein BAC0197 Protein 4e-43 44
ragA YP_001977547.1 two-component response regulator protein BAC0638 Protein 1e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ragA YP_001977547.1 two-component response regulator protein VFG1389 Protein 7e-34 42
ragA YP_001977547.1 two-component response regulator protein VFG0596 Protein 3e-39 41
ragA YP_001977547.1 two-component response regulator protein VFG1390 Protein 1e-37 41