Gene Information

Name : ssrA (STM474_1398)
Accession : YP_005242293.1
Strain : Salmonella enterica ST4/74
Genome accession: NC_016857
Putative virulence/resistance : Virulence
Product : sensor kinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1433688 - 1436498 bp
Length : 2811 bp
Strand : -
Note : -

DNA sequence :
GTGATCAAGTGCCAAAGATTTTGCAACAGGCAACTGGAGGGAAGCATTATGAATTTGCTCAATCTCAAGAATACGCTGCA
AACATCTTTAGTAATCAGGCTAACTTTTTTATTTTTATTAACAACAATAATTATTTGGCTGCTATCTGTGCTTACCGCAG
CTTATATATCAATGGTTCAGAAACGGCAGCATATAATAGAGGATTTATCCGTTCTATCCGAGATGAATATTGTACTAAGC
AATCAACGGTTTGAAGAAGCTGAACGTGACGCTAAAAATTTAATGTATCAATGCTCATTAGCGACTGAGATTCATCATAA
CGATATTTTCCCTGAGGTGAGCCGGCATCTATCTGTCGGTCCTTCAAATTGCACGCCGACGCTAAACGGAGAGAAGCACC
GTCTCTTTCTGCAGTCCTCTGATATCGATGAAAATAGCTTTCGTCGCGATAGTTTTATTCTTAATCATAAAAATGAGATT
TCGTTATTATCTACTGATAACCCTTCAGATTATTCAACTCTACAGCCTTTAACGCGAAAAAGCTTTCCTTTATACCCAAC
CCATGCCGGGTTTTACTGGAGTGAACCAGAATACATAAACGGCAAAGGATGGCACGCTTCCGTTGCGGTTGCCGATCAGC
AAGGCGTATTTTTTGAGGTGACGGTTAAACTTCCCGATCTCATTACTAAGAGCCACCTGCCATTAGATGATAGTATTCGA
GTATGGCTGGATCAAAACAACCACTTATTGCCGTTTTCATACATCCCGCAAAAAATACGTACACAGTTAGAAAATGTAAC
GCTGCATGATGGATGGCAGCAAATTCCCGGATTTCTGATATTACGCACAACCTTGCATGGCCCCGGATGGAGTCTGGTTA
CGCTGTACCCATACGGTAATCTACATAATCGCATCTTAAAAATTATCCTTCAACAAATCCCCTTTACATTAACAGCATTG
GTGTTGATGACGTCGGCTTTTTGCTGGTTACTACATCGCTCACTGGCCAAACCGTTATGGCGTTTTGTCGATGTCATTAA
TAAAACCGCAACTGCACCGCTGAGCACACGTTTACCAGCACAACGACTGGATGAATTAGATAGTATTGCCGGTGCTTTTA
ACCAACTGCTTGATACTCTACAAGTCCAATACGACAATCTGGAAAACAAAGTCGCAGAGCGCACCCAGGCGCTAAATGAA
GCAAAAAAACGCGCTGAGCGAGCTAACAAACGTAAAAGCATTCATCTTACGGTAATAAGTCATGAGTTACGTACTCCGAT
GAATGGCGTACTCGGTGCAATTGAATTATTACAAACCACCCCTTTAAACATAGAGCAACAAGGATTAGCTGATACCGCCA
GAAATTGTACACTGTCTTTGTTAGCTATTATTAATAATCTGCTGGATTTTTCACGCATCGAGTCTGGTCATTTCACATTA
CATATGGAAGAAACAGCGTTACTGCCGTTACTGGACCAGGCAATGCAAACCATCCAGGGGCCAGCGCAAAGCAAAAAACT
GTCATTACGTACTTTTGTCGGTCAACATGTCCCTCTCTATTTTCATACCGACAGTATCCGTTTACGGCAAATTTTGGTTA
ATTTACTCGGGAACGCGGTAAAATTTACCGAAACCGGAGGGATACGTCTGACGGTCAAGCGTCATGAGGAACAATTAATA
TTTCTGGTTAGCGATAGCGGTAAAGGGATTGAAATACAGCAGCAGTCTCAAATCTTTACTGCTTTTTATCAAGCAGACAC
AAATTCGCAAGGTACAGGAATTGGACTGACTATTGCGTCAAGCCTGGCTAAAATGATGGGCGGTAATCTGACACTAAAAA
GTGTCCCCGGGGTTGGAACCTGTGTCTCGCTAGTATTACCCTTACAAGAATACCAGCCGCCTCAACCAATTAAAGGGACG
CTGTCAGCGCCGTTCTGCCTGCATCGGCAACTGGCTTGCTGGGGAATACGCGGTGAACCACCCCACCAGCAAAATGCGCT
TCTCAACGCAGAGCTTTTGTATTTCTCCGGAAAACTCTACGACCTGGCGCAACAGTTAATATTGTGTACACCAAATATGC
CAGTAATAAATAATTTGTTACCACCCTGGCAGTTGCAGATTCTTTTGGTTGATGATGCCGATATTAATCGGGATATCATC
GGCAAAATGCTTGTCAGCCTGGGCCAACACGTCACTATTGCCGCCAGTAGTAACGAGGCTCTGACTTTATCACAACAGCA
GCGATTCGATTTAGTACTGATTGACATTAGAATGCCAGAAATAGATGGTATTGAATGTGTACGATTATGGCATGATGAGC
CGAATAATTTAGATCCTGACTGCATGTTTGTGGCACTATCCGCTAGCGTAGCGACAGAAGATATTCATCGTTGTAAAAAA
AATGGGATTCATCATTACATTACAAAACCAGTGACATTGGCTACCTTAGCTCGCTACATCAGTATTGCCGCAGAATACCA
ACTTTTACGAAATATAGAGCTACAGGAGCAGGATCCGAGTCGCTGCTCAGCGCTACTGGCGACAGATGATATGGTCATTA
ATAGCAAGATTTTCCAATCACTGGACCTCTTGCTGGCTGATATTGAAAATGCCGTATCGGCTGGAGAAAAAATCGATCAG
TTAATTCACACATTAAAAGGCTGTTTAGGTCAAATAGGGCAGACTGAATTGGTATGCTATGTCATAGACATTGAGAATCG
CGTAAAAATGGGGAAAATCATCGCGCTGGAGGAACTAACCGACTTACGCCAGAAAATACGTATGATCTTCAAAAACTACA
CCATTACTTAA

Protein sequence :
MIKCQRFCNRQLEGSIMNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLS
NQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLFLQSSDIDENSFRRDSFILNHKNEI
SLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIR
VWLDQNNHLLPFSYIPQKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTAL
VLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALNE
AKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTL
HMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLI
FLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKGT
LSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDII
GKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKK
NGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAVSAGEKIDQ
LIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIFKNYTIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssrA NP_460357.1 sensor kinase Virulence SPI-2 Protein 0.0 100
spiR AAC44299.1 SpiR Virulence SPI-2 Protein 0.0 100
ssrA NP_456136.1 putative two-component sensor kinase Virulence SPI-2 Protein 0.0 99
ssrA NP_805063.1 two-component sensor kinase Virulence SPI-2 Protein 0.0 99
ssrA YP_216400.1 secretion system regulator:sensor component Virulence SPI-2 Protein 0.0 99
YPO0256 YP_002345336.1 two-component sensor/regulator Not tested Not named Protein 1e-163 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssrA YP_005242293.1 sensor kinase VFG0493 Protein 0.0 100