Gene Information

Name : SNSL254_A1532 (SNSL254_A1532)
Accession : YP_002040673.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : secretion system apparatus protein SsaU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 1499871 - 1500929 bp
Length : 1059 bp
Strand : +
Note : 'member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli'

DNA sequence :
ATGAGCGAGAAAACAGAACAGCCTACAGAAAAGAAATTACGTGATGGCCGTAAGGAAGGGCAGGTTGTCAAAAGTATTGA
AATAACATCATTATTTCAGCTGATTGCGCTTTATTTGTATTTTCATTTCTTTACTGAAAAGATGATTTTGATACTGATTG
AGTCAATAACTTTCACATTACAATTAGTAAATAAACCATTTTCTTATGCATTAACGCAATTGAGCCATGTTTTAATAGAG
TCATTGGCTTCTGTACTGCTGTTTCTGGGCGCTGGGGTAATAGTTGCTACTGTGGGTAGCGTGTTTCTTCAGGTGGGGGT
GGTTATTGCCAGCAAGGCCATAGGTTTTAAAAGCGAGCATATAAATCCGGTAAGTAATTTTAAGCAGATATTCTCTTTAC
ATAGCGTAGTAGAATTATGTAAATCCAGCCTAAAAGTTATCATGTTATCTCTTATCTTTGCCTTTTTCTTTTATTATTAT
GCCAGTACTTTTCGGGCGCTACCGTACTGTGGGTTAGCCTGTGGCGTGCTTGTGGTTTCTTCTTTAATAAAATGGTTATG
GGTAGGGGTGATGGCTTTTTATATCGTCGTTGGCATACTGGACTATTCTTTTCAATATTATAAGATTAGAAAAGATCTAA
AAATGAGTAAAGATGACGTAAAACAAGAGCATAAAGATCTGGAGGGCGACCCTCAAATGAAGACACGGCGTCGGGAAATG
CAGAGTGAAATACAAAGTGGGAGTTTAGCTCAATCTGTTAAACAATCTGTTGCGGTAGTGCGTAACCCAACGCATATTGC
GGTTTGTCTTGGCTATCATCCCACCGATATGCCAATACCACGCGTCCTGGAAAAAGGCAGTGATGCTCAAGCTAACTATA
TTGTTAACATCGCTGAACGCAACTGCATCCCCGTTGTTGAAAATGTTGAGCTGGCCCGCTCATTATTTTTTGAAGTGGAA
CGCGGAGATAAAATTCCTGAAACGTTATTTGAACCCGTTGCAGCCTTGTTACGTATGGTGATGAAGATAGATTATGCGCA
TTCTACCGAAACACCATAA

Protein sequence :
MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSHVLIE
SLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY
ASTFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE
RGDKIPETLFEPVAALLRMVMKIDYAHSTETP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 8e-157 99
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 4e-158 99
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 2e-158 99
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 3e-158 99
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-158 99
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 5e-72 49
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-52 41
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-52 41
escU AAL57530.1 EscU Virulence LEE Protein 2e-50 41
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 3e-50 41
escU CAI43886.1 EscU protein Virulence LEE Protein 2e-50 41
escU CAC81850.1 EscU protein Virulence LEE II Protein 2e-50 41
unnamed AAL06357.1 EscU Virulence LEE Protein 4e-49 41
escU AAK26703.1 EscU Virulence LEE Protein 2e-50 41
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 3e-50 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A1532 YP_002040673.1 secretion system apparatus protein SsaU VFG0522 Protein 2e-158 99