Gene Information

Name : Shewana3_4296 (Shewana3_4296)
Accession : YP_863811.1
Strain :
Genome accession: NC_008573
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional activator CusR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 179552 - 180232 bp
Length : 681 bp
Strand : -
Note : response regulator in two-component regulatory system with CusS; regulates the copper efflux system

DNA sequence : 
ATGAAAATATTGATCGTCGAAGACGAAATTAAAACAGGTGAATATCTCAGCAAAGGGCTTAGAGAGGCAGGGTTCGTAGT
GGATCACGCTGATAATGGTCTTACCGGATATCATCTCGCCATGACAGCCGAGTATGATTTAGTCATTCTGGACATCATGC
TGCCTGATATGAACGGCTGGGATATCATCCGGATGCTGCGCACTGCCGGAAAGGGTATGCCGGTCTTACTGCTGACGGCC
CTCGGCACGATCGAACACAGGGTCAAAGGACTGGAACTGGGTGCGGACGATTATCTGGTTAAACCCTTTGCGTTTGCCGA
ACTGCTAGCCCGGGTGAAAACCCTTCTGAGGCGGGGAAACACGATGATCACGGAAAGCCAGTTTAGGGTGGCTGGTCTCT
CGATTGATCTCGTATCCAGAAAAGTCAGTCGCGCCGGAAACCGCATTGTGCTCACCAGTAAAGAGTTCAGCCTGCTGGAA
TTTTTCATTCGCCATCAGGGAGAGGTTCTTCCCCGTTCCCTGATTGCCTCTCAGGTCTGGGACATGAATTTTGACAGCGA
CACTAACGCGATTGATGTCGCCGTAAAGCGACTCCGCGCTAAAATAGACAACGATTACGAGACAAAGCTGATCCAGACAG
TCCGGGGCGTGGGCTATATGCTGGAGGTCCCGGATGCATAG

Protein sequence : 
MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGWDIIRMLRTAGKGMPVLLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGNTMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLE
FFIRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEVPDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-55 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0347 Protein 5e-93 91
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0111 Protein 4e-94 86
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0638 Protein 1e-64 62
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0083 Protein 5e-71 61
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0197 Protein 1e-64 59
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0308 Protein 3e-61 57
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR BAC0125 Protein 1e-63 56
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR HE999704.1.gene1202. Protein 2e-36 41
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR AE000516.2.gene3505. Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR VFG0596 Protein 9e-56 54
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR VFG1390 Protein 5e-42 43
Shewana3_4296 YP_863811.1 DNA-binding transcriptional activator CusR VFG1389 Protein 1e-34 41