Gene Information

Name : ssaN (SC1436)
Accession : YP_216423.1
Strain : Salmonella enterica SC-B67
Genome accession: NC_006905
Putative virulence/resistance : Virulence
Product : type III secretion system ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 1533379 - 1534680 bp
Length : 1302 bp
Strand : +
Note : similar to the YscN family of proteins

DNA sequence :
ATGAAGAATGAATTGATGCAACGTCTGAGGCTGAAATATCCGCCCCCCGATGGTTATTGTCGATGGGGCCGAATTCAGGA
TGTCAGCGCAACGTTGTTAAATGCGTGGTTGCCTGGGGTATTTATGGGTGAGTTGTGCTGTATAAAGCCTGGAGAAGAAC
TTGCTGAAGTCGTGGGGATTAATGGCAGCAAAGCTTTGCTATCTCCTTTTACGAGTACAGCCGGACTTCACTGCGGGCAG
CAAGTGATGGCCTTAAGGCGACGCCATCAGGTTCCCGTGGGCGAAGCGTTATTAGGGCGAGTCATTGATGGTTTTGGTCG
TCCCCTTGATGGCCGCGAACTGCCAGAAGTCTGCTGGAAAGACTATGATGCAATGCCTCCTCCCGCAATGGTTCGACAGC
CTATCACTCAACCATTAATGACGGGGATTCGCGCTATTGATAGCGTTGCGACCTGTGGCGAAGGGCAACGAGTGGGTATT
TTTTCTGCTCCTGGCGTGGGGAAAAGCACGCTTCTGGCGATGCTGTGTAATGCGCCAGACGCAGACAGCAATGTTCTGGT
GTTAATTGGTGAACGTGGACGAGAAGTCCGCGAATTCATCGATTTTACACTGTCTGAAGAGACCCGAAAACGTTGTGTCA
TTGTTGTCGCAACCTCTGACAGACCCGCCTTAGAGCGCGTGAGGGCGCTGTTTGTGGCTACCACGATAGCAGAATTTTTT
CGCGATAATGGAAAGCGAGTCGTCTTGCTTGCCGACTCACTGACGCGTTATGCCAGGGCCGCACGAGAAATCGCTCTGGC
CGCCGGAGAGACCGCAGTTTCTGGAGAATATCCGCCAGGCGTATTTAGTGCATTGCCACGACTTTTAGAACGTACAGGAA
TGGGGGAAAAAGGCAGTATTACCGCATTTTATACGGTACTGGTGGAAGGCGATGATATGAATGAGCCGTTGGCGGATGAA
GTCCGTTCACTACTTGATGGACATATTGTGCTATCCCGGCGGCTTGCAGAGAGGGGGCATTATCCTGCCATTGACGTGCT
GGCAACGCTCAGCCGCGTTTTTCCAGTCGTTACCAGCCATGAGCATCGTCAACTGGCGGCGATATTGAGGCGGCGCCTGG
CGCTTTACCAGGAGGTTGAACTGTTAATACGCATTGGGGAATACCAGCGAGGAGTTGATACTGATACTGACAAAGCCATT
GATACCTATCCGGATATTTGCACATTTTTGCGACAAAGTAAGGATGAAGTATGCGGACCCGAGCTACTTATAGAAAAATT
ACACCAAATACTCACCGAGTGA

Protein sequence :
MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQ
QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI
FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE
VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI
DTYPDICTFLRQSKDEVCGPELLIEKLHQILTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 0.0 100
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 0.0 99
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 0.0 99
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 0.0 99
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 0.0 99
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-107 59
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-92 55
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 4e-73 52
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-70 51
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-84 51
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-84 51
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-74 51
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-74 51
escN AAK26715.1 EscN Virulence LEE Protein 1e-87 51
escN AAL57542.1 EscN Virulence LEE Protein 1e-87 51
escN AAC31513.1 L0034 Virulence LEE Protein 1e-87 51
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-87 51
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-87 51
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-87 51
escN CAC81862.1 EscN protein Virulence LEE II Protein 6e-88 51
unnamed AAL06369.1 EscN Virulence LEE Protein 6e-88 51
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-88 51
escN CAI43874.1 EscN protein Virulence LEE Protein 4e-88 51
escN YP_003223475.1 translocator EscN Virulence LEE Protein 5e-88 51
escN AAC38383.1 EscN Virulence LEE Protein 8e-88 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-83 51
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-83 51
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 6e-74 51
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-86 50
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-86 50
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 2e-71 50
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 2e-71 50
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-84 50
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 5e-84 50
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 5e-84 50
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 5e-84 50
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-83 50
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 6e-72 50
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 5e-79 50
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 1e-87 50
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 9e-73 48
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-73 48
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 3e-73 48
invC AAS66861.1 InvC Not tested SSR-2 Protein 6e-62 47
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 7e-64 45
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 7e-64 45
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 7e-64 45
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 7e-64 45
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 2e-64 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 1e-62 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaN YP_216423.1 type III secretion system ATPase VFG0515 Protein 0.0 99
ssaN YP_216423.1 type III secretion system ATPase VFG0390 Protein 2e-90 57
ssaN YP_216423.1 type III secretion system ATPase VFG0192 Protein 4e-92 55
ssaN YP_216423.1 type III secretion system ATPase VFG0048 Protein 2e-88 53
ssaN YP_216423.1 type III secretion system ATPase VFG1254 Protein 8e-72 52
ssaN YP_216423.1 type III secretion system ATPase VFG0812 Protein 7e-88 51
ssaN YP_216423.1 type III secretion system ATPase VFG0730 Protein 4e-88 51
ssaN YP_216423.1 type III secretion system ATPase VFG2144 Protein 6e-78 51
ssaN YP_216423.1 type III secretion system ATPase VFG2499 Protein 3e-63 47
ssaN YP_216423.1 type III secretion system ATPase VFG1008 Protein 2e-66 45
ssaN YP_216423.1 type III secretion system ATPase VFG0555 Protein 3e-64 45
ssaN YP_216423.1 type III secretion system ATPase VFG1778 Protein 2e-63 45
ssaN YP_216423.1 type III secretion system ATPase VFG2459 Protein 2e-64 44
ssaN YP_216423.1 type III secretion system ATPase VFG2331 Protein 2e-62 43