Gene Information

Name : Acid345_1658 (Acid345_1658)
Accession : YP_590733.1
Strain : Candidatus Koribacter versatilis Ellin345
Genome accession: NC_008009
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2003711 - 2004403 bp
Length : 693 bp
Strand : -
Note : -

DNA sequence : 
ATGAGGATTCTGGTTGTAGAGGACGATGCGCCCCTCGCAAAGTTCGTCGCTAAGGGTCTGGAGGAAGAACACTATGCGGT
GGACACCGTGCACGATGGGGAGCAGGCGAAGTCGATGGCATGCGAAGTCGAGTACGACCTCGTAATCCTGGATCTAAACC
TTCCCAAGCTGGATGGCTTCGGCGTACTGCAACAGGTAAGGGACCATAAACGCTGTCCGATCCTGGTTCTTACAGGGAGG
ACGAGGCTGGAGGACCGCGTCCGGGTGTTGGATGGGGGCGCGGACGACTGTCTGCTGAAGCCTTTTTCCTTTGCCGAACT
TTCGGCGAGAGTACGGGCCTTGTTGCGGCGTGGAGTGTCTGCGGCGCAATTCAAATTGCGGGTTGCCGACCTCGAACTGG
ATCGGGTGCAACGCACGGTTGCTCGCTCCGGCAGGCGAATTGAACTCACCTCGAAAGAGTTTGCGTTGCTCGAATACCTG
ATGAGGAATGCAGGAAGGCGGGTGACGCGCACCATGATCATCGAACACGTGTGGAACTTGAAGTTCGATACCGGAACCAA
TGTCGTGGACGTCTATGTCAACTATCTGCGACGTAAGGTTGACTCGGAGTTCCCGACAAAGTTGATCGGCACGGTGCGTG
GAGTTGGCTATGAGATTCGTCCTGAGGGCGTGGAGGCATCGGTATGTCAGTGA

Protein sequence : 
MRILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNLPKLDGFGVLQQVRDHKRCPILVLTGR
TRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGVSAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYL
MRNAGRRVTRTMIIEHVWNLKFDTGTNVVDVYVNYLRRKVDSEFPTKLIGTVRGVGYEIRPEGVEASVCQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-43 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-42 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0125 Protein 8e-47 49
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0638 Protein 7e-43 49
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0347 Protein 9e-43 48
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0111 Protein 7e-48 47
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0197 Protein 3e-45 47
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0308 Protein 2e-44 47
Acid345_1658 YP_590733.1 two component transcriptional regulator BAC0083 Protein 4e-45 45
Acid345_1658 YP_590733.1 two component transcriptional regulator AE000516.2.gene3505. Protein 3e-26 43
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-36 42
Acid345_1658 YP_590733.1 two component transcriptional regulator AE015929.1.gene1106. Protein 2e-31 42
Acid345_1658 YP_590733.1 two component transcriptional regulator HE999704.1.gene1528. Protein 7e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acid345_1658 YP_590733.1 two component transcriptional regulator VFG1390 Protein 9e-42 48
Acid345_1658 YP_590733.1 two component transcriptional regulator VFG0596 Protein 3e-43 47
Acid345_1658 YP_590733.1 two component transcriptional regulator VFG0473 Protein 3e-30 41
Acid345_1658 YP_590733.1 two component transcriptional regulator VFG1386 Protein 1e-36 41