Gene Information

Name : Pat9b_1728 (Pat9b_1728)
Accession : YP_004115600.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : betaine aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 1914165 - 1915631 bp
Length : 1467 bp
Strand : +
Note : KEGG: eta:ETA_17820 betaine aldehyde dehydrogenase; TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase

DNA sequence :
ATGGCTGACATTACGCGCTGCGGCTTATATATCAATGGTCAGGCGTGTCCGGGTAACGGGCCGCTGTTTACTACCATCAA
CCCGGCGAATGGCGAGGTGCTGGCAGAAATTACCTCCGCCAGTCGTGAAGATGTGGATCGCGCGGTCGCTACCGCGCGCG
AAGGACAGCGCATCTGGCGAGGCTATACACCGGTGGAACGCAGTCGCGTGCTGTTAAAAGCCGTTGCTTTACTGCGTGAA
CACAATCAGAGGCTGGCAGAACTGGAAACCGCCGATACCGGCAAGCCAATCAGTGAAACGGCAGCGGTTGATATCGTCAC
CGGAGCGGACGTGCTGGAATATTACGCCGGTCTGGCTCCGGCATTACAGGGCGAGCAAATCCCACTGCGCGATAGCGCAC
TGGTCTACACCCGCCGTGAACCGCTGGGCGTCTGTGCCGGTATTGGCGCCTGGAACTACCCGATTCAAATCGCCTTGTGG
AAAAGCGCCCCGGCGCTGGCTGCGGGTAATGCCATGGTGTTTAAGCCCAGTGAAGTCACACCGCTGAGTGCACTGGAGCT
GGCGAAAATCTACAGCGAAGCCGGGCTACCGGATGGCGTATTTAATGTGGTGCAGGGCGCGGGCGAGGTTGGACAGGCGC
TGAGTCAGCATCCGGATATCGATAAAGTCTCCTTCACTGGCGAAGTCAGCACCGGTAAACGGGTGATGGCGGATGCCGCA
CTGGCCAATCTGAAAGAGGTCACCATGGAGCTGGGCGGTAAATCGCCGCTGATCGTGTTTGCGGATGCCGATGTGGAGCG
TGCTGTTGATGGCGCGCTGATGGCGAATTTCTACAGCAGTGGTCAGGTCTGTACCAATGGCACCCGGGTGTTTGTCCATC
GCAGCATCCAGGCGCAGTTTGAGCAGCGCCTGCTGGAGAAAATGCAGGGCATCCGTATGGGCGATCCGCGCGATGCCACG
GTGAATTTCGGCCCACTGGTCAGCGAGCAGCATTGCCGCAAAGTTGAGAGCTACCTGAAACTCGGCAAGGAGCAAGGCGC
ACGCCTGCTGGCGGGGGGGCACCGCATTATCGACGGTCCGCTGGCGCGTGGTTGCTACATCGAACCGACGGTGTTCAGTG
ATTGCCACGATGAAATGCAGATTGTGCGTGAGGAGATCTTCGGCCCGGTAATGAGCATCCTCACCTTCGACAGTGAAGAA
GAAGTGATACGCCGGGCTAACGATACCGAGCTGGGGTTGGCCGCCGGGATCTTCACCCGCGACCTGAACCGTGCCCATCG
GGTGATCCATCAGATAGAGGCGGGGATCTGCTGGATTAACAGCTGGGGTGAATCGCCCGCACCGATGCCGGTGGGAGGGT
ATAAGCAATCCGGTCTGGGGCGTGAAAACGGCATCGCCACGTTGCAACACTACACGCGCACCAAATCGGTGTTGATTGAG
TTGGGCGACTACCCGAGCGCATTTTGA

Protein sequence :
MADITRCGLYINGQACPGNGPLFTTINPANGEVLAEITSASREDVDRAVATAREGQRIWRGYTPVERSRVLLKAVALLRE
HNQRLAELETADTGKPISETAAVDIVTGADVLEYYAGLAPALQGEQIPLRDSALVYTRREPLGVCAGIGAWNYPIQIALW
KSAPALAAGNAMVFKPSEVTPLSALELAKIYSEAGLPDGVFNVVQGAGEVGQALSQHPDIDKVSFTGEVSTGKRVMADAA
LANLKEVTMELGGKSPLIVFADADVERAVDGALMANFYSSGQVCTNGTRVFVHRSIQAQFEQRLLEKMQGIRMGDPRDAT
VNFGPLVSEQHCRKVESYLKLGKEQGARLLAGGHRIIDGPLARGCYIEPTVFSDCHDEMQIVREEIFGPVMSILTFDSEE
EVIRRANDTELGLAAGIFTRDLNRAHRVIHQIEAGICWINSWGESPAPMPVGGYKQSGLGRENGIATLQHYTRTKSVLIE
LGDYPSAF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaE AAO17179.1 HpaE Not tested tcd island Protein 2e-81 43
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-75 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 5e-76 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 5e-76 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 5e-76 41
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 5e-73 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 7e-76 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_1728 YP_004115600.1 betaine aldehyde dehydrogenase VFG0082 Protein 5e-76 41