Gene Information

Name : SARI_01907 (SARI_01907)
Accession : YP_001570932.1
Strain : Salmonella enterica RSK2980
Genome accession: NC_010067
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein YedW
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1831803 - 1832483 bp
Length : 681 bp
Strand : +
Note : induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistanc

DNA sequence :
ATGAAGATTTTATTGATTGAAGATAACCAGAAAACTATTGAGTGGGTACGTCAGGGACTCACTGAAGCAGGCTATGTGGT
TGATTATGCTTGTGATGGACGAGACGGATTGCACCTGGCCCTTCGGGAACATTATTCATTGATTATTCTTGATATTATGC
TACCCGGACTTGATGGATGGCAGGTTTTGCGCGCGTTACGTACAGCGCACCAGACCCCGGTTATTTACCTGACGGCGCGC
GACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCCAATGATTACCTTGTTAAGCCTTTTTCCTTCGCTGAACT
GCTGGCCAGGGTGAGAGCGCAACTCAGACAGCACGTCTCTGTCTTTACCCGACTGTCGATCAATGGTCTGGACATGGATG
CCACCAGGCAATCGGTGTCGCGAAATAAAAAACCGATTTCCCTGACCCGCAAAGAATTTCTGCTCCTCTGGCTACTGGCG
TCCAGGGCAGGAGAAATCGTGCCCCGAACCGCGATAGCCAGCGAAGTATGGGGGATCAATTTTGACAGTGAAACTAATAC
CGTTGATGTCGCGATTCGTCGGCTTCGCGCCAAAGTAGACGATCCGTTTGAAAAGAAGCTCATTACGACCGTCCGGGGGA
TGGGTTATCGATTACAGGCGGAAGCATCGCAAAATGGTTAA

Protein sequence :
MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIMLPGLDGWQVLRALRTAHQTPVIYLTAR
DSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVSVFTRLSINGLDMDATRQSVSRNKKPISLTRKEFLLLWLLA
SRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFEKKLITTVRGMGYRLQAEASQNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-99 96
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-98 95

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0125 Protein 2e-60 58
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0197 Protein 7e-60 58
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0083 Protein 2e-56 56
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0638 Protein 3e-52 55
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0308 Protein 7e-55 55
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0111 Protein 2e-56 53
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW BAC0347 Protein 1e-49 51
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_007793.3914065.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_007622.3794948.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_002951.3238224.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_002952.2859858.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_013450.8614146.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_010079.5776364.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_003923.1003417.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW NC_002758.1121390.p0 Protein 1e-38 44
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW AE015929.1.gene1106. Protein 8e-33 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW VFG0596 Protein 9e-100 96
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW VFG0473 Protein 4e-29 42
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW VFG1389 Protein 3e-30 42
SARI_01907 YP_001570932.1 transcriptional regulatory protein YedW VFG1390 Protein 5e-38 41