Gene Information

Name : HRM2_18670 (HRM2_18670)
Accession : YP_002603133.1
Strain : Desulfobacterium autotrophicum HRM2
Genome accession: NC_012108
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator (Winged helix family protein)
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2122757 - 2123443 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence :
ATGAGACTCTTACTGGTGGAGGATGATGTCAAAATTGCAGATTTTGTCATAAAGGGGCTTAGTGCTGCTGGATTTGCCGT
TGACCATGCAGTCAATGGTCAGGATGGGCTTCACATGGCCTGTTTTGAAGAGAACGACCTGATTGTGGTTGATGTGATGC
TGCCATGCCTTGACGGAATTTCCCTGATCAAGACACTCAGGGCCAGGGGATTCAACACCCCTGTGATTGTTCTGAGCGCA
AGGGACCGGGTGGACGACAGGGTAAGGGGGTTAGAAGCCGGGGCTGATGATTATCTTACTAAACCCTTTGCCTTTTCTGA
ACTTCTGGCAAGAATTCAGGCCTTGATCAGAAGGGCCGGCGGTGTTGTTGACCCGACAACCCTTAGTTATGGGGAACTGG
TCATGGATTTGATGAAAAGGGAGGTGCGCCGGGATGGCAGGGTGGTGGAGCTCCAGCCCCTGGAGTTTTCTCTTCTTGAA
TATCTCATGAGAAACCAGGAGAGGGTGGTGTCAAAAACCATGATCATGGAGCATGTCTGGAACTACAACTTTGATCCCAT
GACCAATGTGGTGGAGGCAAGGGTGTGCCGCCTGAGGGACAAGATCGACAAGGGATTTCACCCAAAGCTGATCCACACGG
TAAGGGGGGCCGGATATGTCCTGGCGCTGCGCGAAAAGCCTGCCTAA

Protein sequence :
MRLLLVEDDVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGISLIKTLRARGFNTPVIVLSA
RDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAGGVVDPTTLSYGELVMDLMKREVRRDGRVVELQPLEFSLLE
YLMRNQERVVSKTMIMEHVWNYNFDPMTNVVEARVCRLRDKIDKGFHPKLIHTVRGAGYVLALREKPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-44 48
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-43 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0125 Protein 4e-47 52
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0083 Protein 1e-51 51
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0197 Protein 5e-50 50
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0638 Protein 5e-47 50
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0308 Protein 3e-47 48
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0111 Protein 1e-52 46
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) BAC0347 Protein 6e-48 45
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) HE999704.1.gene1528. Protein 4e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) VFG0596 Protein 3e-44 48
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) VFG1389 Protein 3e-39 46
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) VFG1390 Protein 1e-44 44
HRM2_18670 YP_002603133.1 two component transcriptional regulator (Winged helix family protein) VFG1386 Protein 4e-41 42