Gene Information

Name : N175_09340 (N175_09340)
Accession : YP_008488282.1
Strain :
Genome accession: NC_022223
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1977460 - 1979094 bp
Length : 1635 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGATATATCCTTCTTTTCTATTTTCATCCTCTATTTCTGGAATTGGGTGTCAAGCTATTAAAAAAAATAATAACTCATT
TTCTAAACAAGTTAAAAAAGTTAAACGGCTTAAGAAGAGAAAAAATAAAAATAGCTCACATGATTTTAGTAAACCATTTT
ATAGAACGTTTCTTATAGAAACCGCGATTAAAGCAATAAATGAAAGTCAAGGTATTTTAAAAAATAAAGAGAGACGCATA
AAAATACTTCAAGAGTCTCTTCCTGAAGAGGAGCAGTGTCTACCTCTTGAAGAGGAAGCTGAAATGATAAAAGCTACAGA
AAATAAAATAGAAAAAACATTGAAAATAGATAATTCCTTCAGAAATCGCTTAAGAAAAAAAGATGTTAAATTAATGAAGA
AAAAATGGAAGAGAGAGAAGTTATCTATGCTAAATAAAACGAAGCATAGCTGGGTTATTTTAAAAAATAATATTACTACA
CCTACAGGTGAAACATATAATAATATTATGACGCCTGCAGGGAAAATGAAGCTAGGTGATAGTGATATATTCAGTCATAG
TTACAATGATGAAGGTATTTCCAGTGGAAGTATATGTGAATCTGAACATGCGGTAAATCTATGGATGTCTGAGCTGACAT
CAACATCGGGAGATGTGCTTTTTAAAGGTATAAGGCATGGGGTTTTGTCACCGTATGGACTTGATAAAAATAGTCAAGAG
CGCAAAGTCGGTAGAGTCAATCGAGGGAAAGAGGTTATATTGGCTGCCTTGTATGCTAATCAGGCGATCTTAGAGTCTGC
TATACAAAACCCTGATGAAGTGGTGCCTTTACAATTAACATCAACCTCTCTAGTTACCGCTGGTAATGTTTGGTCTGTCA
CTGAAGGTGATCAATTAGAGGACCAAATATATTCATGGAATGAATTATCAAATAAAGTTATAGAATTAGAGGTGGTAGAC
AAATCAGGAAATTGTCAAAAAATTAAGGTTAAACCAGAGATCATTCCTTTTAATTTTGGAGTAAACGAGCTTTCTTTGAA
ATTTAAAATTGGTCAAAAGAAATCGGACAGTATAAACCTAGAGGGTTTAAAGATTCTGTTGGGGGATGGTTTTTGCAATA
GTACTGATCCACAAGGTTGGGTCGGTAAATATTTGGCCGATAACCCTAAAAATAAATCGGTTGTTTTGCAATTGGTACAA
CAAATAAAAGAGATTTGGGAAGCTAAAGCACATAATACCGATGAGAGTGACCCATACAAAATGGCAAGATGCATTGTGTT
ATTAACGTATGAAATTGGGATTATTCCTGCTTGGAATTGCAAAAGTGGTAAAGATCGTACGGGTTTTCTTGACGGAGAAG
TTAAGCGAGAAGTGATTAAATTACATCAGAATGAATCGGTTACTCCTTGGGGAGCACTTGGCAGTGAAGATCAGAAACTA
CTACAGAAGGTTTTACTCAACAGTGGTAACTTACAAATTCAGGAATCGAACACAGGAGGAGCTCAGGGGAATAAAGTGTG
TACAAAAACACCTTGGATGCTGAGCTCAGCAGAACTGTCTCTAAAAAGAAAGAGAATTGGTGATAGAGACGCATGGAAAA
AGATAAAAGGTTTGTCTAATTTTGTGAATTCATGA

Protein sequence :
MIYPSFLFSSSISGIGCQAIKKNNNSFSKQVKKVKRLKKRKNKNSSHDFSKPFYRTFLIETAIKAINESQGILKNKERRI
KILQESLPEEEQCLPLEEEAEMIKATENKIEKTLKIDNSFRNRLRKKDVKLMKKKWKREKLSMLNKTKHSWVILKNNITT
PTGETYNNIMTPAGKMKLGDSDIFSHSYNDEGISSGSICESEHAVNLWMSELTSTSGDVLFKGIRHGVLSPYGLDKNSQE
RKVGRVNRGKEVILAALYANQAILESAIQNPDEVVPLQLTSTSLVTAGNVWSVTEGDQLEDQIYSWNELSNKVIELEVVD
KSGNCQKIKVKPEIIPFNFGVNELSLKFKIGQKKSDSINLEGLKILLGDGFCNSTDPQGWVGKYLADNPKNKSVVLQLVQ
QIKEIWEAKAHNTDESDPYKMARCIVLLTYEIGIIPAWNCKSGKDRTGFLDGEVKREVIKLHQNESVTPWGALGSEDQKL
LQKVLLNSGNLQIQESNTGGAQGNKVCTKTPWMLSSAELSLKRKRIGDRDAWKKIKGLSNFVNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sopB AAK27357.1 SopB Virulence SPI-5 Protein 3e-77 47
sopB AAK27355.1 SopB Virulence SPI-5 Protein 2e-70 45
sopB YP_216030.1 outer protein Virulence SPI-5 Protein 3e-73 45
sopB NP_460064.1 secreted effector protein Virulence SPI-5 Protein 3e-73 45
sopB AAC33723.1 SopB Virulence SPI-5 Protein 7e-71 45
sigD NP_455588.1 cell invasion protein Virulence SPI-5 Protein 3e-72 45
sopB AAK27356.1 SopB Virulence SPI-5 Protein 4e-72 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N175_09340 YP_008488282.1 hypothetical protein VFG0465 Protein 1e-73 45
N175_09340 YP_008488282.1 hypothetical protein VFG0992 Protein 9e-60 41