Gene Information

Name : CYA_1892 (CYA_1892)
Accession : YP_475302.1
Strain : Synechococcus sp. JA-3-3Ab
Genome accession: NC_007775
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator RpaA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1899291 - 1900046 bp
Length : 756 bp
Strand : -
Note : identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGCTCGCATACTCATCATTGAGGACGACCCTTCAATTCTGGATATTCTGCGTATCAATCTGGAGTTGGCGGGCTATGA
GGTCGTGAAGGCCACCGATGGGGTACGCGGACAAGCACTGGCTCTGCAGGTTCTTCCGGATCTCATCATTCTCGACCTGA
TGCTGCCCCAGGTGGACGGCCTGACGGTTTGCCAGCGCTTGCGGCGGGAGGAGCGCACCAGCGAGATCCCGATCCTGATG
CTCACCGCCCTCGGCCAAACCCAAGACAAGATTGAAGGCTTCAACGCTGGCGCCGACGACTACCTGACCAAACCCTTTGA
GGTGCAGGAGCTGCTGGTGCGGGTGCGGGCCCTGCTGCGACGTGCCGATCGCATTCCCCAGACGGCCAAACACGGCGAGA
TCCTCACCTATGGCCCCCTCACCCTGGTGCCAGAGCGCTTCGAGGCGGTGTGGTTTGGCAAAACCATTAAGCTCACCCAC
CTGGAGTTTGACCTGCTCCACTGCCTGATGCAGCGGCACGGCCAGACAGTCTCCCCCAGCGAAATCCTGCAGGAAGTGTG
GGGCTACGAGCCCGACGACGACATCGAGACCATTCGCGTCCACATCCGCCATCTGCGCACCAAGCTGGAGCCGGATCCGC
GCCACCCCCAGTACATCAAAACTGTCTACGGGGCGGGCTACTGTCTGGAGCTGCCCAACATTGCCGATCCCCAGCCGCTG
CAGCCGGAACTGGCAAAAGACTCCTCTTCCCCGTAA

Protein sequence : 
MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLTVCQRLRREERTSEIPILM
LTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRADRIPQTAKHGEILTYGPLTLVPERFEAVWFGKTIKLTH
LEFDLLHCLMQRHGQTVSPSEILQEVWGYEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNIADPQPL
QPELAKDSSSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-17 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_012469.1.7685629. Protein 6e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_002952.2859905.p0 Protein 9e-30 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_007793.3914279.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_007622.3794472.p0 Protein 9e-30 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_002745.1124361.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_009782.5559369.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_002951.3237708.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_003923.1003749.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_002758.1121668.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_009641.5332272.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA NC_013450.8614421.p0 Protein 1e-29 43
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA AF155139.2.orf0.gene Protein 3e-24 42
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA BAC0197 Protein 6e-19 41
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA AE016830.1.gene1681. Protein 4e-30 41
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA HE999704.1.gene2815. Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA VFG0596 Protein 1e-17 42
CYA_1892 YP_475302.1 DNA-binding response regulator RpaA VFG1390 Protein 1e-25 41