Gene Information

Name : PSEBR_a1770 (PSEBR_a1770)
Accession : YP_004352985.1
Strain : Pseudomonas brassicacearum NFM421
Genome accession: NC_015379
Putative virulence/resistance : Virulence
Product : OmpR family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2171252 - 2171932 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence :
ATGAAACTGCTGATCGTCGAAGACCAAACCAAAACCGGCCAATACCTGCGCCAGGGCCTGGGCGAAGCCGGGTTCAACGC
CGATCTGGTGGCCGATGGCATCACCGGCCAGCAACTGGTCTTGAGCGGTGAATACGCCTTGCTGATCCTCGACGTGATGT
TGCCCGGCCGCGATGGTTGGCAGATCCTGCAAGCCGTCCGTGGCGCCGGGCTGGATACACCGGTGCTGTTTCTCACCGCG
CGGGATGCGGTACAGGATCGGGTACACGGCCTGGAGCTGGGCGCCGATGATTACCTGGTCAAGCCCTTTGCTTTTTCCGA
GTTGCTGGCACGGGTGCGCAGCCTGTTGCGTCGAGGCAGTTCGACACAGCAGGAAACCAGCCTGCAACTGGCCGACTTGC
GCCTGGACCTGATCCGCCGTCGCGTCGAACGCAGCGGTCGGCGCATCGACCTCACCGCCAAGGAATTCGCCTTGCTGGAA
ATGCTTCTGCGCCGCCAGGGCGAAGTGCTGCCCAAATCGCTGATCGCGTCCCAGGTCTGGGACATGAATTTCGACAGCGA
CACCAACGTCATCGAAGTCGCGATACGACGCCTGCGAATCAAGATTGACGATGACTTCCCCAGCAAACTGATCCATACCG
TGCGGGGCATGGGCTATGTGCTTGAAGAGCGCAGCCTGTGA

Protein sequence :
MKLLIVEDQTKTGQYLRQGLGEAGFNADLVADGITGQQLVLSGEYALLILDVMLPGRDGWQILQAVRGAGLDTPVLFLTA
RDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGSSTQQETSLQLADLRLDLIRRRVERSGRRIDLTAKEFALLE
MLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRIKIDDDFPSKLIHTVRGMGYVLEERSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-50 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-49 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0083 Protein 2e-65 72
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0638 Protein 2e-59 71
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0197 Protein 5e-61 67
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0308 Protein 6e-61 64
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0111 Protein 9e-63 64
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0347 Protein 3e-55 59
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0125 Protein 5e-57 58
PSEBR_a1770 YP_004352985.1 OmpR family response regulator NC_002516.2.879194.p Protein 1e-25 41
PSEBR_a1770 YP_004352985.1 OmpR family response regulator BAC0487 Protein 8e-27 41
PSEBR_a1770 YP_004352985.1 OmpR family response regulator HE999704.1.gene1528. Protein 1e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSEBR_a1770 YP_004352985.1 OmpR family response regulator VFG0596 Protein 1e-50 55
PSEBR_a1770 YP_004352985.1 OmpR family response regulator VFG1390 Protein 2e-36 46
PSEBR_a1770 YP_004352985.1 OmpR family response regulator VFG0473 Protein 4e-28 41