Gene Information

Name : HYPDE_31988 (HYPDE_31988)
Accession : YP_007914571.1
Strain : Hyphomicrobium denitrificans 1NES1
Genome accession: NC_021172
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1876037 - 1876717 bp
Length : 681 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGCGCGTGCTCGTAGTCGAAGACGATAGGGAAACGGCGCAGTTCCTTCAGAAGTCTTTGAAAGAGAATGGGCACACGGC
CGATCTCGCCGCCGACGGCGAGGCAGGCCTGGCGCTTGCGACCGACGGCGCCTACGATGTTCTGATTGTCGACCGAATGC
TGCCGCGTCTCGATGGTCTTTCGGTCATCAAGTCGCTGCGCGCCCAAGGCAACCGCACCCCCGTCCTCATTCTTTCGGCG
CTGGGCGAGGTCGACGATCGCGTCAAAGGCCTGCGCGCCGGCGGCGATGATTATCTGACGAAGCCCTATGCCTATTCCGA
GCTCCTGGCGCGCGTCGAAGCCCTCGGGCGCCGTACCGCTCCGGAAGAGCAACAGACACGTATCGCCGTCGGCGACCTCG
TGCTCGACAGGCTTTCCCATCGGGTAACTCGCGGCGGAGAGCACATCCTGCTGCAGCCGCGAGAATACCGTCTCCTCGAA
TATCTCATGCAGCACGCCGGACAGGTCGTGACGCGCACGATGCTGCTCGAGCATGTCTGGGACTATCATTTCGATCCGCA
GACGAACGTCATCGACGTGCACGTCTCGCGTTTGCGCGCCAAGATCGACAAGAACTTCGACAAGCCGTTACTGCATACGG
TTCGGGGCGCAGGATACACGATCCGTGACGGCCCTGCTTGA

Protein sequence :
MRVLVVEDDRETAQFLQKSLKENGHTADLAADGEAGLALATDGAYDVLIVDRMLPRLDGLSVIKSLRAQGNRTPVLILSA
LGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAPEEQQTRIAVGDLVLDRLSHRVTRGGEHILLQPREYRLLE
YLMQHAGQVVTRTMLLEHVWDYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRDGPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-38 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0083 Protein 7e-48 50
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-45 49
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-43 48
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0638 Protein 4e-39 48
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0111 Protein 6e-49 47
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-44 45
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-39 44
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 4e-27 41
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 6e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-32 46
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-40 45
HYPDE_31988 YP_007914571.1 winged helix family two component transcriptional regulator VFG0596 Protein 3e-38 43