Gene Information

Name : Osc7112_1866 (Osc7112_1866)
Accession : YP_007114766.1
Strain : Oscillatoria nigro-viridis PCC 7112
Genome accession: NC_019729
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2152448 - 2153191 bp
Length : 744 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: npu:Npun_F5788

DNA sequence :
GTGCTCGGTAACTTGGAAAACCATAAAGAAAAAATTCTGGTAGTCGATGACGAAGCCAGTATCCGCCGCATTCTGGAGAC
TCGCCTTTCCATGATTGGCTACGATGTCGTCACCGCTGCTGACGGCGAAGAAGCTCTCGAAACGTTTCGCAACACCGAAC
CCGACTTAGTGGTTTTGGACGTGATGATGCCGAAGCTAGACGGTTACGGCGTCTGTCAGGAGTTGCGTAAAGAGTCAGAC
GTACCCATCATCATGCTAACCGCTTTGGGAGACGTAGCCGATCGCATCACCGGTTTAGAATTGGGCGCCGACGATTACGT
CGTCAAACCTTTCTCTCCCAAAGAACTTGAAGCCCGCATCCGTTCGGTACTGCGGAGGGTTGACAAAAACGGCGCATCGG
GAATTCCCAGTTCCGGAGTTATCCACGTCACCAATATTAGAATTGACACCAACAAGCGCCAAGTTTACAAAGGCGACGAA
CGAATTCGGCTCACGGGCATGGAATTCAGCCTGTTAGAACTGCTTGTGAGCCGTTCTGGAGAGCCTTTTTCGCGATCGGA
AATTTTGCAGGAAGTGTGGGGATACACGCCAGAACGCCACGTAGACACCCGCGTAGTAGACGTTCACATCTCGCGGCTTA
GGGCAAAGTTGGAAGACGACCCCAGCAATCCCGAATTAATTCTCACCGCCCGCGGCACAGGCTATCTCTTCCAGCGAATT
GTCGAAATTGGAGAAGTAGGATAA

Protein sequence :
MLGNLENHKEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRNTEPDLVVLDVMMPKLDGYGVCQELRKESD
VPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGASGIPSSGVIHVTNIRIDTNKRQVYKGDE
RIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRI
VEIGEVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 4e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 4e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 6e-47 50
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 8e-47 49
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family BAC0125 Protein 4e-39 46
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 4e-43 46
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 1e-43 45
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 3e-41 45
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP000034.1.gene3671. Protein 2e-38 44
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family BAC0083 Protein 2e-36 43
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP000675.2.gene1535. Protein 7e-38 42
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP001918.1.gene5135. Protein 3e-25 42
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family BAC0638 Protein 2e-28 42
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 4e-36 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family HE999704.1.gene1528. Protein 5e-31 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family DQ212986.1.gene4.p01 Protein 2e-32 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family BAC0197 Protein 6e-34 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_002695.1.915041.p Protein 5e-28 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family BAC0533 Protein 6e-29 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP000034.1.gene3834. Protein 5e-28 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP004022.1.gene3215. Protein 3e-34 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP001138.1.gene4273. Protein 2e-28 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family CP000647.1.gene4257. Protein 6e-29 41
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 5e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family VFG1390 Protein 1e-39 44
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family VFG1389 Protein 6e-33 43
Osc7112_1866 YP_007114766.1 two component transcriptional regulator, winged helix family VFG0596 Protein 2e-30 42