Gene Information

Name : SeD_A1953 (SeD_A1953)
Accession : YP_002215739.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : inner membrane protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 1882898 - 1883857 bp
Length : 960 bp
Strand : +
Note : identified by match to protein family HMM PF04463; match to protein family HMM PF08349

DNA sequence :
ATGAATAACAAACCCGTAGTCGGCATTAGCGGATGTCTGACTGGCGCCACGGTACGCTTTGATGGCGGACATAAGCGTAT
GGATTTTGTCATGAACTCTCTGGCGCCGTGGGTGGACTACAAACCGATCTGCCCGGAGGTGGCGATCGGCCTGCCCGTGC
CTCGCCCTGCGCTGCGTCTTATCCAGACGACCTGTGGCGACATTCGGATGCGCTATAGCCATGCCCCGCACGATGACGTC
ACCGAGCGAATGAATGCCTTTGCCGATCGGTTTCTGCCAACAATAGGCGAACTGGCGGGGTTTATTGTGTGTGCAAAATC
GCCCAGTTGCGGAATGGAGCGCGTTCGCCTGTATGATGAAAAGGGTAACAGGGGCCGCAAAGCTGGCACGGGGCTGTTTA
CCGCCGCGATGATGGACAAATATCCCTGGCTGCCGATAGAGGAAGATGGTCGCCTGCACGATCCGGTACTACGCGAGAAT
TTCATCGCACGTATCTTCGCGCTACATGAATTAAATGCGCTACGCGCGCAGGGCTTGAGTCGTCACAGTTTGCTCGCGTT
TCATAGCCGATACAAACTTCAGCTTCTCGCCCACCACCAGGCCGGCTACCGCGAAATTGGCCCTTTCGTCGCGCGTCTGC
ATGAGTGGGGCGATCTGGATGCCTTCTTTGTCCGATACAGAGAAAAACTGATGGCTATCCTGCGCCACCCCGCTTCACGT
AAAAATCACACCAATGTGCTGATGCATATCCAGGGCTATTTTCACCGCGCGTTGAACAGCAGGCAACGCGCGGAATTACG
CGAGGTGATTCTCGGCTACCGGGCGGGCCAACTACCTATCCTGGCACCGTTAACGCTGCTGAAGCACTATCTGGCGGAAC
ATCCAGATGACTATCTACGCAGCCAGAATTATTTTGAGCCGTACCCTGATACGTTAGGGCTGCGCTTAGCCATCACCTGA

Protein sequence :
MNNKPVVGISGCLTGATVRFDGGHKRMDFVMNSLAPWVDYKPICPEVAIGLPVPRPALRLIQTTCGDIRMRYSHAPHDDV
TERMNAFADRFLPTIGELAGFIVCAKSPSCGMERVRLYDEKGNRGRKAGTGLFTAAMMDKYPWLPIEEDGRLHDPVLREN
FIARIFALHELNALRAQGLSRHSLLAFHSRYKLQLLAHHQAGYREIGPFVARLHEWGDLDAFFVRYREKLMAILRHPASR
KNHTNVLMHIQGYFHRALNSRQRAELREVILGYRAGQLPILAPLTLLKHYLAEHPDDYLRSQNYFEPYPDTLGLRLAIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 9e-152 99
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 6e-152 99
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 4e-152 99
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 5e-152 99
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 9e-152 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A1953 YP_002215739.1 inner membrane protein VFG0490 Protein 3e-152 99