Gene Information

Name : Acin_0192 (Acin_0192)
Accession : YP_004895580.1
Strain : Acidaminococcus intestini RyC-MR95
Genome accession: NC_016077
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 204569 - 205243 bp
Length : 675 bp
Strand : +
Note : COG0745

DNA sequence :
ATGAAAATCCTCGTTGTAGAAGATGAACCTTCCTTAAACCAGATTATTGCCAAGAGGCTCAAGATCGAAGGCTACTCCGT
CGATCAAGCAGAAAATGGCCGTGATGCCTTGGAGTTTGTGGCGCTGGCCGAATACGACCTGCTCATCGTGGACATCCTTA
TGCCCGAAATGGATGGTCTGACCCTTGTCCACACGCTGCGGGAAAAGAATGTGACCGTACCGGTTCTTTTCCTTACGGCC
CTTGATGGGACGGAAGATAAGGTCAAGGGCCTTGATGCCGGAGGGGATGATTATTTGGTCAAACCCTTTGAATTTTCAGA
GCTCCTTGCCCGGGTTCGGGCCCTCTTGCGCCGCTCTGGGGGGACGGCGGTGCCCAAGAATGAATTGCAGCTGTCCGATC
TTGTCCTGTCGGAGAGTGCCCATACGGTTACCCGCGGCGGGAAGCCAATCGCGTTGACCCCCAAAGAATTTTCTGTGCTC
GAATACCTGCTTCGGAACCAAGGGATTGTTCTGTCCCGGGATAAGATCCTGGAACATGCCTGGGATTTTTCCTATGAAGG
AGCTTCTAACATGGTAGATGTATACATCAAGACCTTACGAAAGAAAATCGACCATGATTTTGAGCCTAAGCTCCTTCACA
CCGTACGAGGTGCCGGTTATGTCCTTAAGGAATAA

Protein sequence :
MKILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGLTLVHTLREKNVTVPVLFLTA
LDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSGGTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVL
EYLLRNQGIVLSRDKILEHAWDFSYEGASNMVDVYIKTLRKKIDHDFEPKLLHTVRGAGYVLKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-36 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-35 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0083 Protein 3e-45 51
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0111 Protein 2e-47 48
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0308 Protein 1e-41 48
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0125 Protein 5e-44 47
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0197 Protein 6e-41 47
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0638 Protein 2e-38 46
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0347 Protein 2e-40 44
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 2e-30 41
Acin_0192 YP_004895580.1 DNA-binding response regulator AE015929.1.gene1106. Protein 3e-28 41
Acin_0192 YP_004895580.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 7e-28 41
Acin_0192 YP_004895580.1 DNA-binding response regulator NC_012469.1.7685629. Protein 6e-27 41
Acin_0192 YP_004895580.1 DNA-binding response regulator BAC0288 Protein 1e-28 41
Acin_0192 YP_004895580.1 DNA-binding response regulator AE016830.1.gene1681. Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acin_0192 YP_004895580.1 DNA-binding response regulator VFG1390 Protein 6e-43 45
Acin_0192 YP_004895580.1 DNA-binding response regulator VFG0596 Protein 7e-37 44
Acin_0192 YP_004895580.1 DNA-binding response regulator VFG1386 Protein 5e-42 44
Acin_0192 YP_004895580.1 DNA-binding response regulator VFG1389 Protein 3e-32 41