Gene Information

Name : Sde_1948 (Sde_1948)
Accession : YP_527420.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Virulence
Product : Heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2450044 - 2450724 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence :
ATGCGGTTACTAGTAGTCGAAGACGAAGTCAAAACCGGGGATTATTTGCAGCAAGGCCTGAGCGAAGCCGGCTTTATGGT
GACGCTCGCTCGGAACGGTCTCGATGGCCATCACCTGGCGATGACGGAGACCTTTGATTTGTTGATTCTCGATGTGATGC
TGCCCGATGTGGGCGGCTGGCGCATTGTTCAGTCCATAAGAGAATCGGGATGCCAGGCGCCCGTATTATTTCTCACCGCG
CGCGACAGTGTTGATGATCGTGTTAAAGGATTAGAACTTGGCGCTGATGACTACCTGGTTAAGCCCTTCGCGTTTGCCGA
ATTGCTGGCTCGGGTACGCACCTTGTTGCGTAGAAGTACGGCGCCGGTACTCGCCGATCAGATCACAGTAGCGGATTTGA
TCCTCGATCTGCCAAAGCATCGTGCCCTTCGTGGTGGGCGCAAAATCAATCTCAGTCATAAGGAATTTTGTTTGCTGGAA
CTGCTTGCTCGGCGCCAGGGTGAAGTGCTGCCACGCTCGTTGATTGCTTCCCAGGTGTGGGATATGAATTTTGACTCCGA
TACCAATGTGATTGATGTCGCCATCCGTCGTTTAAGAAGCAAAATTGATGAAGGCTTTGAGCCCAAGCTGATCCATACCG
TTCGTGGCATGGGCTACAAACTCGATGTTGAGGACGAATAG

Protein sequence :
MRLLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVGGWRIVQSIRESGCQAPVLFLTA
RDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRSTAPVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLE
LLARRQGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRSKIDEGFEPKLIHTVRGMGYKLDVEDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-58 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-57 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0083 Protein 6e-71 67
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0111 Protein 5e-74 67
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0638 Protein 4e-65 67
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0308 Protein 2e-66 64
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0125 Protein 2e-64 63
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0197 Protein 2e-64 63
Sde_1948 YP_527420.1 Heavy metal response regulator BAC0347 Protein 2e-65 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_1948 YP_527420.1 Heavy metal response regulator VFG0596 Protein 3e-58 56
Sde_1948 YP_527420.1 Heavy metal response regulator VFG1389 Protein 3e-36 46
Sde_1948 YP_527420.1 Heavy metal response regulator VFG1390 Protein 2e-41 44
Sde_1948 YP_527420.1 Heavy metal response regulator VFG1386 Protein 1e-34 41