Gene Information

Name : CFSAN001921_10040 (CFSAN001921_10040)
Accession : YP_008255382.1
Strain : Salmonella enterica CFSAN001921
Genome accession: NC_021814
Putative virulence/resistance : Virulence
Product : type III secretion system protein SsaT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2058510 - 2059289 bp
Length : 780 bp
Strand : -
Note : Salmonella pathogenicity island 2 protein; member of a type III secretion system involved in the survival and replication of Salmonella in a host cell; Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGGCACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTGAGCCTTTCTTTATTACTTCC
CTTATTAAAAAGTGGCAGTTTAGGGGCCGCACTTTTACGTAATGGCGTGCTTATGTCACTTACCTTTCCGATATTACCAA
TCATTTACCAGCAGAAGATTATGATGCATATTGGTAAAGATTACAGTTGGTTAGGGTTAGTCACTGGAGAGGTGATTATT
GGTTTTTCAATTGGGTTTTGTGCGGCGGTTCCCTTTTGGGCCGTTGATATGGCGGGGTTTCTGCTTGATACTTTACGTGG
CGCGACAATGGGTACGATATTCAATTCTACAATAGAAGCTGAAACCTCACTTTTTGGCTTGCTTTTCAGCCAGTTCTTGT
GTGTTATTTTCTTTATAAGCGGCGGCATGGAGTTTATATTAAACATTCTGTATGAGTCATATCAATATTTACCACCAGGG
CGTACTTTATTATTTGACCAGCAATTTTTAAAATATATCCAGGCAGAGTGGAGAACGCTTTATCAATTATGTATCAGCTT
CTCTCTTCCTGCCATAATATGTATGGTATTAGCCGATCTGGCTTTAGGTCTTTTAAATCGGTCGGCACAACAATTGAATG
TGTTTTTCTTCTCAATGCCGCTCAAAAGTATATTGGTTCTACTGACGCTCCTGATCTCATTCCCTTATGCTCTTCATCAC
TATTTGGTTGAAAGCGATAAATTTTATATTTATCTAAAAGACTGGTTTCCATCTGTATGA

Protein sequence :
MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVII
GFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG
RTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
YLVESDKFYIYLKDWFPSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-99 100
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 3e-99 100
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 5e-98 99
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 6e-98 99
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 6e-98 99
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 7e-45 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_10040 YP_008255382.1 type III secretion system protein SsaT VFG0521 Protein 2e-99 100