Gene Information

Name : sopB (CFSAN002050_11850)
Accession : YP_008260285.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : inositol phosphate phosphatase SopB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2146077 - 2147762 bp
Length : 1686 bp
Strand : -
Note : pathogenicity island 1 protein; catalyzes the formation of phosphatidylinositol-3 phosphate from phosphatidylinositol-3,4,5-triphosphate; involved in the formation and maintenance of Salmonella-containing vacuole in the host cell; Derived by automated com

DNA sequence :
ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGCCTACAAAAAACCTTATACAA
TGGAATGCAGATTCTATCAGGCCAGGGCAAAGCGCCGGCTAAAGCATCCGACGCTCGCCCGGAAATTATTGTCCTGCGAG
AACCTGGCGCGACATGGGGGAATTATCTACAGCATCAGAAGACGTCTAACCACTCTCTGCATGACCTCTATAACTTACAG
CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCAATGGCAAACCAAATGGAGTT
AGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAAGAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAAC
TTATTGCAGCACGCACTCAGCAGCAAAATGGCCTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAC
GCTCAGGTCAAGCAGCTTAATAACCAGCCCTGGCAAACCATAAAACATACACTCACGCATAACGGGCATCACTATACCAA
CACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAAGATATCTTTCCCAGTGCTTATCAGGGAAAGGGCGTATGCA
GTTGGGATACCAAAAATATTCATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACAGTAAAGATAAA
ACGCTTTTTTGTGGGATACGTCATGGCGTGCTTTCCCCCTATCATGAAAAAGATCCGCTTCTGCGTCAGGTCGGCGCTGA
AAACAAAGCCAAAGAAGTATTAACTGCGGCACTTTATAGTAAACCTGAGTTACTTAACAGAGCCTTAGAGGGCGAAGCGG
TAAGCCTTAAACTGGTATCCGTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACGATGGTCGAGGATCAA
ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAATAAAGATGGCGATCTACAGAC
GGTAAAAATAAAACCGGACGTCGCCGCATTTAATATGGGGGTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAGG
CATCGGATAGATATAATGCCGAAGCGCTACAACAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCACGCCAGATTAAGGATATCTGGAA
AAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAACTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACG
CGGTGCCCGCCTGGAATTGTAAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGATCATTTCT
TTCCATCAGACCCATATGTTAAATGCGCCTGGCAGTCTTCCGGATAGCGGTGGACAGAAAATTTTCCAAAAAGTATTACT
GAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGCGGGGCGGGAAACAAAGTACTGAAAAATTTATCGCCAGAGG
TGCTCAATCTTTCCTATCAAAAACGAATTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGCATTTCTTCATTAATCACA
TCTTGA

Protein sequence :
MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKASDARPEIIVLREPGATWGNYLQHQKTSNHSLHDLYNLQ
RDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQNGLPAKEAHRFAAVAFRD
AQVKQLNNQPWQTIKHTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYQGKGVCSWDTKNIHHANNLWMSTVSVHEDSKDK
TLFCGIRHGVLSPYHEKDPLLRQVGAENKAKEVLTAALYSKPELLNRALEGEAVSLKLVSVGLLTASNIFGKEGTMVEDQ
MRAWQSLTQPGKMIHLKIRNKDGDLQTVKIKPDVAAFNMGVNELALKLGFGLKASDRYNAEALQQLLGNDLRPEARPGGW
VGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSGKDRTGMMDSEIKREIIS
FHQTHMLNAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAGNKVLKNLSPEVLNLSYQKRIGDENIWQSVKGISSLIT
S

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sigD NP_455588.1 cell invasion protein Virulence SPI-5 Protein 0.0 98
sopB YP_216030.1 outer protein Virulence SPI-5 Protein 0.0 97
sopB NP_460064.1 secreted effector protein Virulence SPI-5 Protein 0.0 97
sopB AAC33723.1 SopB Virulence SPI-5 Protein 0.0 96
sopB AAK27355.1 SopB Virulence SPI-5 Protein 0.0 90
sopB AAK27356.1 SopB Virulence SPI-5 Protein 5e-174 86
sopB AAK27357.1 SopB Virulence SPI-5 Protein 2e-158 78

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sopB YP_008260285.1 inositol phosphate phosphatase SopB VFG0465 Protein 0.0 97
sopB YP_008260285.1 inositol phosphate phosphatase SopB VFG0992 Protein 3e-82 47