Gene Information

Name : CFSAN002050_11875 (CFSAN002050_11875)
Accession : YP_008260290.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2151484 - 2152164 bp
Length : 681 bp
Strand : -
Note : response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGT
TGATTATGCCTGTGATGGACGAGACGGATTGCACCTGGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGC
TGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTACGCACGGCGTATCAGCCCCCTGTTATTTGCCTGACGGCGCGC
GACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGACTACCTTGTTAAGCCTTTTTCCTTCGCCGAACT
GCTGGCCCGGGTGAGAGCTCAACTCAGACAGCATGTCCCTGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGATG
CCACAAAGCAATCGGTGTCACGAAATGGCAAACCTATTTCCCTGACCCGTAAAGAATTCCTGCTCCTCTGGTTACTGGCG
TCCCGGGCAGGAGAAATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACAC
CGTTGATGTCGCGATTCGTCGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCGGGGGA
TGGGTTATCGATTACAGGCGGAAACGTCGCAGAATGGTTAA

Protein sequence :
MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAYQPPVICLTAR
DSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLA
SRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRLQAETSQNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-102 99
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-101 98

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0083 Protein 4e-56 58
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0197 Protein 3e-58 58
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0125 Protein 4e-59 56
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0638 Protein 1e-51 56
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0308 Protein 5e-53 55
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0111 Protein 5e-56 53
CFSAN002050_11875 YP_008260290.1 transcriptional regulator BAC0347 Protein 2e-49 52
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_007622.3794948.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator AE015929.1.gene1106. Protein 3e-33 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_003923.1003417.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_013450.8614146.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_002951.3238224.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_007793.3914065.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_002758.1121390.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_010079.5776364.p0 Protein 3e-38 45
CFSAN002050_11875 YP_008260290.1 transcriptional regulator NC_002952.2859858.p0 Protein 3e-38 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_11875 YP_008260290.1 transcriptional regulator VFG0596 Protein 2e-102 99
CFSAN002050_11875 YP_008260290.1 transcriptional regulator VFG0473 Protein 2e-30 42
CFSAN002050_11875 YP_008260290.1 transcriptional regulator VFG1389 Protein 3e-31 42
CFSAN002050_11875 YP_008260290.1 transcriptional regulator VFG1390 Protein 4e-37 41