Gene Information

Name : SU5_02030 (SU5_02030)
Accession : YP_006087664.1
Strain : Salmonella enterica B182
Genome accession: NC_017623
Putative virulence/resistance : Virulence
Product : Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2230283 - 2232328 bp
Length : 2046 bp
Strand : +
Note : -

DNA sequence :
ATGCGTTCATGGTTAGGTGAGGGAGTCAGGGCGCAACAGTGGCTCAGTGTATGCGCGGGTCGGCAGGATATGGTTCTGGC
GACGGTGTTATTAATCGCTATTGTGATGATGCTGTTACCTTTGCCGACCTGGATGGTTGATATCCTGATTACTATCAACC
TTATGTTTTCAGTGATCCTGCTCTTAATTGCTATTTATCTTAGTGACCCTCTCGATTTATCGGTATTTCCGTCTTTATTA
CTTATTACTACATTATATCGTTTGTCACTCACAATCAGCACATCACGGCTGGTACTGTTACAACATAATGCCGGTAATAT
TGTGGATGCTTTCGGTAAGTTTGTCGTAGGAGGAAATCTCACCGTTGGGTTGGTCGTATTTACCATCATTACTATCGTGC
AATTTATTGTCATTACAAAAGGTATCGAGAGGGTGGCGGAAGTTAGCGCACGTTTCTCGCTTGATGGGATGCCAGGCAAA
CAAATGAGTATCGATGGCGATTTGCGTGCCGGAGTTATCGATGCAGACCATGCCCGTACATTAAGACAGCATGTCCAGCA
GGAAAGCCGCTTTCTCGGTGCGATGGACGGTGCGATGAAATTTGTTAAAGGCGATACGATTGCCGGTATTATTGTTGTTC
TGGTGAACATTATCGGCGGTATCATTATCGCTATCGTACAATATGATATGTCGATGAGTGAGGCTGTTCACACTTATAGC
GTACTGTCAATCGGAGATGGTTTATGTGGGCAAATTCCATCGCTGCTGATTTCCCTTAGCGCGGGAATTATTGTCACCCG
TGTCCCGGGTGAGAAACGCCAGAACCTGGCGACAGAGTTGAGTTCTCAAATTGCCAGACAACCTCAGTCGCTCATATTAA
CCGCTGTGGTTTTAATGCTCCTCGCTTTAATTCCTGGCTTTCCTTTTATCACTCTCGCTTTCTTTTCAGCGTTGTTAGCA
TTGCCAATTATCCTCATTCGCCGCAAAAAGTCTGTGGTTTCCGCAAATGGCGTCGAAGCACCGGAAAAAGATAGTATGGT
TCCCGGCGCATGTCCTCTAATCTTACGTCTTAGCCCGACGTTACATTCTGCCGACCTGATTCGTGATATTGACGCCATGA
GATGGTTTTTATTTGAGGATACCGGCGTCCCTCTCCCTGAGGTGAATATTGAGGTTTTGCCTGAACCCACCGAAAAATTG
ACGGTACTGCTATATCAGGAACCCGTATTTAGTTTATCTATTCCCGCTCAGGCGGATTATTTATTGATAGGCGCGGACGC
TAGTGTGGTGGGTGACAGCCAGACGTTACCGAACGGGATGGGGCAGATCTGTTGGCTTACAAAAGACATGGCCCATAAGG
CGCAAGGTTTTGGACTGGACGTTTTCGCGGGCAGCCAACGTATCTCTGCCTTATTAAAATGTGTCCTGCTTCGGCATATG
GGAGAGTTTATTGGTGTTCAGGAAACGCGTTATCTAATGAATGCGATGGAAAAAAACTACTCTGAGCTGGTGAAAGAGCT
TCAGCGCCAGTTACCCATTAATAAAATCGCTGAAACTTTGCAACGGCTTGTATCAGAGCGGGTTTCTATTAGAGATTTAC
GTCTTATTTTCGGCACCTTAATTGACTGGGCGCCACGTGAAAAAGATGTCCTGATGTTGACAGAATATGTCCGTATCGCG
CTTCGTCGTCATATTCTGCGTCGTCTTAATCCGGAAGGAAAACCGCTGCCGATTTTGCGGATCGGCGAAGGTATTGAAAA
CCTCGTGCGTGAATCCATTCGCCAGACGGCAATGGGGACCTATACTGCGCTGTCGTCTCGTCATAAGACGCAGATCCTGC
AACTTATCGAGCAGGCGCTGAAGCAGTCAGCCAAATTATTCATTGTCACTTCTGTCGACACCCGACGTTTCTTGCGAAAA
ATTACAGAAGCCACCTTGTTCGACGTACCGATTTTGTCATGGCAGGAATTAGGAGAGGAGAGCCTTATACAAGTGGTAGA
AAGTATTGACCTTAGCGAAGAGGAGTTGGCGGACAATGAAGAATGA

Protein sequence :
MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLL
LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK
QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA
LPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKL
TVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIA
LRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRK
ITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaV CAA70536.1 secretion system apparatus Virulence SPI-2 Protein 0.0 100
ssaV NP_460379.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 0.0 100
ssaV NP_456114.1 putative type III secretion protein Virulence SPI-2 Protein 0.0 99
ssaV NP_805085.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 0.0 99
ssaV YP_216422.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 0.0 99
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 5e-138 58
escV YP_003236089.1 putative translocator EscV Virulence LEE Protein 3e-110 49
escV CAI43875.1 EscV protein Virulence LEE Protein 3e-111 49
ECs4569 NP_312596.1 hypothetical protein Virulence LEE Protein 9e-111 49
escV AAC38382.1 EscV Virulence LEE Protein 3e-111 49
escV YP_003223476.1 translocator EscV Virulence LEE Protein 4e-111 49
escV AAC31514.1 L0035 Virulence LEE Protein 6e-111 49
escV ACU09459.1 EscV protein Virulence LEE Protein 6e-111 49
escV NP_290269.1 hypothetical protein Virulence LEE Protein 9e-111 49
unnamed AAL06368.1 EscV Virulence LEE Protein 9e-109 48
escV YP_003232152.1 T3SS structure protein EscV Virulence LEE Protein 7e-111 48
escV CAC81861.1 EscV protein Virulence LEE II Protein 1e-110 48
escV AAK26714.1 EscV Virulence LEE Protein 5e-111 48
escV AAL57541.1 EscV Virulence LEE Protein 5e-111 48
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-102 47
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-102 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SU5_02030 YP_006087664.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0514 Protein 0.0 100
SU5_02030 YP_006087664.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0729 Protein 2e-111 49
SU5_02030 YP_006087664.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0813 Protein 4e-111 49
SU5_02030 YP_006087664.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0064 Protein 9e-86 42
SU5_02030 YP_006087664.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0384 Protein 1e-84 41