Gene Information

Name : SFxv_0217 (SFxv_0217)
Accession : YP_005725847.1
Strain : Shigella flexneri 2002017
Genome accession: NC_017328
Putative virulence/resistance : Virulence
Product : Outer membrane usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 230784 - 232667 bp
Length : 1884 bp
Strand : -
Note : -

DNA sequence :
ATGGATCCACGGCTACTGGAATACTACAACCGCGAACTGAGCTATCTGCGGGAAACGGGAGCCGAATTTGCCGCCCGTCA
TCCCAAAGTCGCCGCCCGGCTGGGCATGCAGGGAACGGATATTGCCGATCCGTATGTAGAGCGAATGGTCGAGGCCTTCA
GCTTCCTGACCGCCCGCACGCAGCTAAAAATTGACGCTGAATTCCCCCGTTTCACCCAGCGCCTGCTGGAAGTGGTCAGC
CCCAATTACGTCACACCCACGCCCTCAATGAGCGTGGCGCAGTTGCATCCCGATACGGAAGAAGGCGATCTGGCGAAAGG
ATTTACCGTCCCGCGCGACACAGCCTTTTTCTCCGCCATTCCGGAAGGCGAAAGCACTGCCTGCCAGTTTCGCAGCAGCC
AGGATGTAACGCTGTGGCCGCTCGCCATCGAAGAGGCGCGACTGACCGCCGCGCCACCGGATATGCCTGCCCTGCACCGC
TACCTGCCGGCCAACATTCACGTCGCCGGGGCGCTGCGTATTACCCTGCGCACCTTTGGTGAACTAACGTTCAGTCAGCT
TGCCGGACTGGACAGGCTGCCGTTTTATCTCTGCGGCGAGGAGCGTACGGCCTCACACCTGTTAGAACTTCTACATACCA
GCGCCATCGCGCCCCTGGCTGGCATTCCGGGGCATTTTGACGGCGCGCTGGATGTGAATCTGCAACAGCCCGTTATGTAC
GAAGGCCTGGAGCCGGATCAGGGGCTGCTGCCGCTGGCGTGGAACGTGTTTCACGGTCATAACCTGCTGCATGAATATTT
TGCCTGTCCGGAACGCTTCTATTTTTTCACCCCGACAGGCCTGTCTGCCGGATTACAGAAAATTGACGGTGGCGTGGCGG
AGATTGTTATCCTGCTGAACCGCCTGCCGCCGGACTGGCTGATCCACCAGACAAATGCGGCACAGTTCAGCCTGTTCTGT
ACCCCGGTTATCAACCTGTTTCCCCGCGTCACCGCCCGGATCGATGTCACGCACAGCACGACGGAACAGCATCTGGTGGT
GGACAGAACCCATCCGCTGGATTATGAGGTGTTCTCGGTCCAGGAAGTGGAAGGGCTGGAAACCGACACCACACGGAAGA
TGGCCTTTCGCCCGCTCTACCACACCCGCAATAATGATGAAGGCAATCACGGACGTTATTTTTCCCTGCGCCGGGAGCCC
CGCCGCTTATCAGAAAACGCCCGCCGTTACGGCACCCGTACCCCCTATACGGGCTCGGAAGTGTTCCTGTCGCTGGTTGA
CCAGTATGAAGCGCCGTACCCGGAAAATCTGCGCCACATCACCATCACGGCCATGGTCACTAACCGCGATCTGCCCTGTC
TTATTGCCCGCAATGGCCGGGACGATCTAACCGTGGATGCAGCCATCCCGGTGGCGGGCGTAGGGCTTATCCGCCCGCCA
CGCTCGCCGCAGCCCCCGATGGCTGAACGTGAGATGGCATGGCGGTTGATCCGCCAGTTATCTTTTAATTATCTGCCGCT
GGCCGATCTGGATCACCGTACCGGCGGCCAGGCGTTGCGAGATCTGCTGAACCTGTTTATTCCTGCTCATGACAGTCCGC
AATCGCGCCAGGTGCGCAGCCTGATTGGTTGTAAAACGACCCCGGTCACCCGCCGTCTGCCCGGTTCCGGACTACTGGTC
TATGGGCGTGGCGTCAGTTGTGAACTGACGGTGGATGAAGAAGGTTTTTCCGGCATCAGTCCGTATCTGTTCGGCCTGGT
GCTGGAACACTATATCGCCCGCCATGTTTCCATTAATACCTTCTCGCAGATGACGCTGCACAGCATGCAGCGCGGCAAAA
TTATGACCTGGCCTGTCAGGGCGGGACAGCGGGGAAGCGTATGA

Protein sequence :
MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTARTQLKIDAEFPRFTQRLLEVVS
PNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAIPEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHR
YLPANIHVAGALRITLRTFGELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY
EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLNRLPPDWLIHQTNAAQFSLFC
TPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSVQEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREP
RRLSENARRYGTRTPYTGSEVFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP
RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLV
YGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGKIMTWPVRAGQRGSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 0.0 92

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFxv_0217 YP_005725847.1 Outer membrane usher protein VFG2074 Protein 4e-121 42