Gene Information

Name : PSJM300_10730 (PSJM300_10730)
Accession : YP_006524568.1
Strain : Pseudomonas stutzeri DSM 10701
Genome accession: NC_018177
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2351052 - 2351729 bp
Length : 678 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGAAATTACTGGTAGCTGAAGACGAACCCAAAACCGGGGCGTACCTGCAACAAGGACTTACCGAGGCCGGATTTACCGT
CGACCGCGTCATGACTGGTACAGATGCGCTCCAATACGCGCTGAGTGAGGTCTATGACCTTTTGATCCTGGACGTGATGA
TGCCGGGGCTTGAGGGATGGGAGGTGCTGCGCATGGTCAGAGCAGCAGGGAAAGACGTACCCGTATTGTTCTTGACCGCA
CGTGATGGCGTAGAAGACCGCGTCAAAGGCCTGGAGCTGGGCGCGGACGACTACCTGATTAAGCCGTTCGCGTTCTCCGA
ACTTCTGGCAAGGGTTCGGACGTTGCTTCGCAGGGGCAGCGGCTCCCCCACCCAAACCACCGTGAAAATTTCAGATCTCG
AAGTGGACCTGCTAAAGCGCCGCGCCGTTCGTGCTGGGAAGCGGATTGATCTGACGGCGAAGGAATTTTCATTGTTGGAG
TTGTTGATGCGCCGGCGCGGCGAGGTGCTTCCGAAGTCCCTGATTGCCTCTCAGGTATGGGATATGAACTTCGACAGCGA
CACCAACGTTATCGAGGTCGCGGTACGCCGCCTGCGCGCAAAAGTCGACGACGACTTCGATCACAAACTGATCCATACCG
TGCGTGGCATGGGCTATATGATGGATGCACCAGAGTGA

Protein sequence :
MKLLVAEDEPKTGAYLQQGLTEAGFTVDRVMTGTDALQYALSEVYDLLILDVMMPGLEGWEVLRMVRAAGKDVPVLFLTA
RDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSGSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLE
LLMRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAVRRLRAKVDDDFDHKLIHTVRGMGYMMDAPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-58 58
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-57 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0638 Protein 3e-82 84
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0083 Protein 3e-87 81
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0197 Protein 5e-67 63
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0111 Protein 2e-72 62
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0308 Protein 9e-68 61
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0347 Protein 1e-66 60
PSJM300_10730 YP_006524568.1 transcriptional activator CopR BAC0125 Protein 7e-68 60
PSJM300_10730 YP_006524568.1 transcriptional activator CopR NC_002516.2.879194.p Protein 3e-32 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSJM300_10730 YP_006524568.1 transcriptional activator CopR VFG0596 Protein 2e-58 58
PSJM300_10730 YP_006524568.1 transcriptional activator CopR VFG1390 Protein 7e-42 45
PSJM300_10730 YP_006524568.1 transcriptional activator CopR VFG1389 Protein 2e-38 43
PSJM300_10730 YP_006524568.1 transcriptional activator CopR VFG1386 Protein 3e-37 42