Gene Information

Name : copR (PAM18_2154)
Accession : YP_005974739.1
Strain : Pseudomonas aeruginosa M18
Genome accession: NC_017548
Putative virulence/resistance : Virulence
Product : two-component response regulator, CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2354720 - 2355406 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence :
ATGAACATGAAACTGCTGATCGTCGAAGACGAACCGCGCATCGGCCAGTACCTGCGCCAGGGGCTCGCCGAGGCAGGCTT
CGCCGTCGACCTGAGCGACGATGGCAACGAGGGCGAGCAACTGGCCCTGGGCGGCGACTACGACCTGCTGATCCTCGACG
TCATGCTGCCCGGCCGTGACGGCTGGCAGATCCTGCGCAGCGTGCGCGACGCCGGGATGACCGTACCGGTGCTGTTCCTG
ACCGCCCGCGATGCCGTAGAGGACCGCGTGCGCGGCCTCGAACAAGGCGCCGACGATTACCTGGTGAAGCCGTTCGCCTT
CGTCGAACTGCTCGCCCGGGTGCGCACCCTGCTGCGCCGGGGCAGCCAGCAGTTGCAGGAGACCACCCTGCAACTGGCCG
ACCTCGAACTCGATTTGCTGCGCCGCCGGGTGCAACGCCAGGGCAAGCGGATCGACCTCACCGCCAAGGAGTTCGCCCTG
CTCGAACTGCTGCTGCGGCGCAGCGGCGAGGTGCTGCCCAAGTCGCTGATCGCCTCGCAGGTCTGGGACATGAACTTCGA
CAGCGATACCAACGTCATCGAGGTGGCCATCCGCCGCCTGCGCGCCAAGGTCGACGACGACTACCCGCAGCGCCTGATCC
ATACCGTGCGCGGCATGGGCTACGTTCTCGAAGAGCGCGACGAATGA

Protein sequence :
MNMKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGWQILRSVRDAGMTVPVLFL
TARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGSQQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFAL
LELLLRRSGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEERDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-52 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-51 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_005974739.1 two-component response regulator, CopR BAC0638 Protein 4e-61 73
copR YP_005974739.1 two-component response regulator, CopR BAC0083 Protein 6e-67 72
copR YP_005974739.1 two-component response regulator, CopR BAC0111 Protein 5e-64 64
copR YP_005974739.1 two-component response regulator, CopR BAC0308 Protein 9e-61 62
copR YP_005974739.1 two-component response regulator, CopR BAC0197 Protein 2e-58 60
copR YP_005974739.1 two-component response regulator, CopR BAC0347 Protein 2e-56 59
copR YP_005974739.1 two-component response regulator, CopR BAC0125 Protein 5e-58 59
copR YP_005974739.1 two-component response regulator, CopR BAC0487 Protein 2e-26 42
copR YP_005974739.1 two-component response regulator, CopR NC_002516.2.879194.p Protein 8e-25 42
copR YP_005974739.1 two-component response regulator, CopR HE999704.1.gene1528. Protein 3e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_005974739.1 two-component response regulator, CopR VFG0596 Protein 1e-52 57
copR YP_005974739.1 two-component response regulator, CopR VFG1390 Protein 1e-36 46
copR YP_005974739.1 two-component response regulator, CopR VFG1389 Protein 2e-28 43
copR YP_005974739.1 two-component response regulator, CopR VFG0473 Protein 1e-27 41