Gene Information

Name : silR (ETEC_0218)
Accession : YP_006113807.1
Strain : Escherichia coli ETEC H10407
Genome accession: NC_017633
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 247727 - 248407 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATATTGATCGTCGAAGACGAAATTAAAACAGGTGAATATCTCAGCAAAGGGCTTACAGAAGCAGGGTTCGTAGT
GGATCACGCTGATAATGGTCTTACCGGATATCATCTCGCCATGACCGCCGAGTATGATTTAGTCATTCTGGATATCATGC
TACCTGATGTGAACGGCTGGGATATCATCCGTATGCTGCGCACTGCCGGAAAGGGTACGCCGGTCTTACTGCTGACGGCC
CTGGGCACGATCGAACACAGGGTCAAAGGACTGGAGCTGGGTGCGGACGATTATCTGGTTAAACCCTTTGCGTTTGCCGA
ACTGCTCGCCCGGGTGAGAACTCTTCTGAGGCGGGGAAACACGATGATCACGGAAAGCCAGTTTAAGGTGGCTGACCTCT
CTATTGATCTCGTATCCAGAAAAGTCAGCCGCGCCGGGAACCGCATTGTGCTCACCAGTAAAGAGTTCAGCCTGCTGGAA
TTCTTCATTCGCCATCAGGGAGAAGTTCTTCCCCGCTCCCTGATTGCCTCTCAGGTCTGGGACATGAATTTTGACAGCGA
CACTAACGCGATTGATGTCGCAGTAAAGCGACTCCGCGCTAAAATAGACAACGATTACGAGACAAAACTGATCCAGACAG
TGCGGGGCGTGGGCTACATGCTGGAGATCCCGGATGCATAG

Protein sequence : 
MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWDIIRMLRTAGKGTPVLLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNTMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLE
FFIRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEIPDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-55 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-55 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0347 Protein 4e-94 93
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0111 Protein 6e-95 87
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0083 Protein 8e-71 62
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0638 Protein 6e-65 62
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0197 Protein 6e-66 60
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0308 Protein 1e-62 59
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator BAC0125 Protein 3e-64 57
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_013450.8614146.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_002951.3238224.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_007793.3914065.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_002758.1121390.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_010079.5776364.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_002952.2859858.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_007622.3794948.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator HE999704.1.gene1202. Protein 1e-36 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator NC_003923.1003417.p0 Protein 4e-34 41
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator AE000516.2.gene3505. Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator VFG0596 Protein 5e-56 55
silR YP_006113807.1 DNA-binding response regulator transcriptional regulator VFG1390 Protein 5e-42 43