Gene Information

Name : sopB (SE451236_11305)
Accession : YP_008265290.1
Strain : Salmonella enterica 08-1736
Genome accession: NC_021820
Putative virulence/resistance : Virulence
Product : inositol phosphate phosphatase SopB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2423600 - 2425285 bp
Length : 1686 bp
Strand : -
Note : pathogenicity island 1 protein; catalyzes the formation of phosphatidylinositol-3 phosphate from phosphatidylinositol-3,4,5-triphosphate; involved in the formation and maintenance of Salmonella-containing vacuole in the host cell; Derived by automated com

DNA sequence :
ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGCCTACAAAAAACCTTATACAA
CGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCTAAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAG
AACCCGGCGCGACATGGGGGAATTATCTACAGCATCAGAAGGCGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG
CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCAATGGCAAACCAAATGGAGTT
AGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAAGAAGCCGCGGCAAAAGCATTGAAGAAAAATCTTATCGAAC
TTATTGCAGCACGCACTCAGCAGCAGGATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT
GCTCAGGTCAAGCAGCTTAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCATAACGGGCATCACTATACCAA
CACGCAGCTCCCTGCAGCAGAGATGAAAATCGGCGCAAAAGATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCA
GTTGGGATACCAAGAATATTCATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA
ACGCTTTTTTGCGGGATACGTCATGGCGTGCTTTCCCCCTATCATGAAAAAGATCCGCTTCTGCGTCACGTCGGCGCTGA
AAACAAAGCCAAAGAAGTATTAACTGCGGCACTTTTTAGTAAACCTGAGTTGCTTAACAAAGCCTTAGCGGGCGAGGCGG
TAAGCCTGAAACTGGTATCCGTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACGATGGTCGAGGACCAA
ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAATAAAGATGGCGATCTACAGAC
GGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGTGTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAGG
CATCGGATAGCTATAATGCCGAGGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG
GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGCCAGATTAAGGATATATGGAA
AAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAACTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACG
CGGTACCCGCCTGGAATTGTAAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGATCATTTCC
TTACATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAAATTTTCCAAAAAGTATTACT
GAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGCGGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGG
TGCTCAATCTTTCCTATCAAAAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGCATTTCTTCATTAATCACA
TCTTGA

Protein sequence :
MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKAPDARPEIIVLREPGATWGNYLQHQKASNHSLHNLYNLQ
RDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQDGLPAKEAHRFAAVAFRD
AQVKQLNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTKNIHHANNLWMSTVSVHEDGKDK
TLFCGIRHGVLSPYHEKDPLLRHVGAENKAKEVLTAALFSKPELLNKALAGEAVSLKLVSVGLLTASNIFGKEGTMVEDQ
MRAWQSLTQPGKMIHLKIRNKDGDLQTVKIKPDVAAFNVGVNELALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGW
VGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSGKDRTGMMDSEIKREIIS
LHQTHMLSAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRVGDENIWQSVKGISSLIT
S

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sopB YP_216030.1 outer protein Virulence SPI-5 Protein 0.0 100
sopB NP_460064.1 secreted effector protein Virulence SPI-5 Protein 0.0 100
sigD NP_455588.1 cell invasion protein Virulence SPI-5 Protein 0.0 99
sopB AAC33723.1 SopB Virulence SPI-5 Protein 0.0 98
sopB AAK27355.1 SopB Virulence SPI-5 Protein 0.0 91
sopB AAK27356.1 SopB Virulence SPI-5 Protein 1e-173 86
sopB AAK27357.1 SopB Virulence SPI-5 Protein 9e-160 78

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sopB YP_008265290.1 inositol phosphate phosphatase SopB VFG0465 Protein 0.0 100
sopB YP_008265290.1 inositol phosphate phosphatase SopB VFG0992 Protein 6e-83 47