Gene Information

Name : LF82_024 (LF82_024)
Accession : YP_002555187.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 257715 - 259556 bp
Length : 1842 bp
Strand : -
Note : corresponding to LF82_p024 in publication : Miquel et al., PLoS One; 536; APEC_01; ED1a; S88; UMN026; UTI89

DNA sequence :
GTGGCTTTTGAAGAACGTTACTACCGCGAAGAACTGGATTATCTGCGCCAGCTTGGCAAACTGTTGGCGCAGGAAAAACC
GCATCTGGCCCATTTTCTGGCCGAGAAAGAGGGTGATCCGGACGTGGAGCGTCTGATGGAAGCCTTTGCCTTTATGTCCG
GTAGCCTGCGCCAGAAACTTGAGGACGAATTCCCCGAATTCACCCATGGGCTAATCCGTATGCTGTGGGCAAACTATTTA
CGCCCGGTTCCGGCCATGACGGTTATTGCCTATGAACCCAAAACCGATCAGTTAAAAGTCCCTGTTCAGGTCTGTCGTAA
TGAACTGATCAGAAGCCGCTCAGAAAAGTCCTCCCTGACTGCTCAGAAGGTGCTGCCTGACAATCATGATAAAATCGTTT
CTTCCGTAGCCTGCCATTTCACGCTGGCGCGCGATATCTGGCTGCAACCACTGCGCATTCTCGATACCCGCAACGCCAGC
AGTCTGAAAGAAGGCATCATAGATATCAGTTTTACCGCAGATAACAATGTCTCCCCCGCCATGCTTGACCTGAACAAAAT
CACGTTCTGGCTGGGTAATGAAGACGATTATACCCGACACCAGCTTTATCTGTGGTTTTGCGAATGCCTGATGGATGCGG
AACTGATTGCCGGAGAGCACAGCCTGCCGCTGCCGGATCTGTGGCTGGATGCTGCGGGTTTTGACAACCAGGATGCCCTG
CTGCCGTGGCCGAAAAATGTCCACAGCGGCTACCGCGTGCTTCAGGAGTATTTCTGCTATCCCGAAGCCTTCTTCTTTTT
CCATCTGCGCGATGTTGCGCCGCTACCAGACGATTTCCCGGTGAGTGCGTTTACGCTGCGCCTGCACTTTAACCGCCCGT
TACCTGCCGACATCAAGCTGCGCCAGGATTCGCTGCGTCTGCACTGTACGCCAGCCATTAACCTGTTTACGCATTATGCG
GAACCCGTCAGGCCGGATGGGCGGATGGCGGAATACCCGCTGCGCGCCAGCCATAAGCATCCGGACGCCTATGACATTTT
TCAGGTCAGTACAGTCACCAGTAAAATCAAAGTGTCAGGGACTGATTCCAGCCCCGGCAGCCAGGTGCGTGTCTGGCCCG
AATTTGAAAGTTTCCAGCACCAGATGGAGTACAGCCGCCAGCGGGAAGTCGTCTACTGGCATCACCGGACTAAAACGTCC
CTGTTTCACTACGGGCTTGAACATAGTATCGCCTTTGTCCATGCAGACGGTAGCATTCCGGGCAGCTCACGGTTTAACGA
TGACGTGATCACCACGTCATTAATCTGTACCAACCGTATGATCCCTGCCCGGCTGCATACCGGTGATATCTGCGTGGCCG
TCAACAAAAATCCGGCAGTGGCCTCATTTCGTAATGTCACGCGCCCGACACAGCCGCTCTGGCCAGTCACGGACGGCGAC
ATGCACTGGTCGCTGATTTCCGCGATGAACCTGAACTACCTCTCCCTGCTGGACAGGGAGACACTGATCCAGATCCTGCG
GACCTTCGACCTGCCAGGCGCTCACCATCCGCAGCGGGCCAGACTGTCACGCCAGAAACTGGATGCCATAGAAAAACTCG
AAACCAAACCTGTTGACAGGTTGTTTAAAGGCGTACCGGTTCGCGGGCTGGCGACCACGCTGTGGATACGTCCCGATCCG
TTTATCTGCGAAGGTGAAATTTATCTTCTGGGTACCGTGCTCTCGCACTTCTTTGCCCTCTACGCCAGCATCAATTCGTA
CCACTGTCTGAAAATCATTAACACGGAAAGTCAGGAGGCTTGGGAATGGCAGGAGAAAATGGGCCAGCACGCCCTGATAT
AG

Protein sequence :
MAFEERYYREELDYLRQLGKLLAQEKPHLAHFLAEKEGDPDVERLMEAFAFMSGSLRQKLEDEFPEFTHGLIRMLWANYL
RPVPAMTVIAYEPKTDQLKVPVQVCRNELIRSRSEKSSLTAQKVLPDNHDKIVSSVACHFTLARDIWLQPLRILDTRNAS
SLKEGIIDISFTADNNVSPAMLDLNKITFWLGNEDDYTRHQLYLWFCECLMDAELIAGEHSLPLPDLWLDAAGFDNQDAL
LPWPKNVHSGYRVLQEYFCYPEAFFFFHLRDVAPLPDDFPVSAFTLRLHFNRPLPADIKLRQDSLRLHCTPAINLFTHYA
EPVRPDGRMAEYPLRASHKHPDAYDIFQVSTVTSKIKVSGTDSSPGSQVRVWPEFESFQHQMEYSRQREVVYWHHRTKTS
LFHYGLEHSIAFVHADGSIPGSSRFNDDVITTSLICTNRMIPARLHTGDICVAVNKNPAVASFRNVTRPTQPLWPVTDGD
MHWSLISAMNLNYLSLLDRETLIQILRTFDLPGAHHPQRARLSRQKLDAIEKLETKPVDRLFKGVPVRGLATTLWIRPDP
FICEGEIYLLGTVLSHFFALYASINSYHCLKIINTESQEAWEWQEKMGQHALI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1761 YP_851424.1 hypothetical protein Not tested PAI II APEC-O1 Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_024 YP_002555187.1 hypothetical protein VFG2078 Protein 3e-116 41