Gene Information

Name : SVI_2241 (SVI_2241)
Accession : YP_003556990.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : type III secretion system apparatus lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 2572236 - 2572967 bp
Length : 732 bp
Strand : -
Note : -

DNA sequence :
ATGACGTATTTTAAGTGTACTTTATTATTGCTAGTCATATTGTTGAGTGGCTGTAAGGTTGATCTATTTAGAGATCTTTC
TCAAGACGATGCGAATCAGATGGTTGCACTTTTAATGTTACACCATATTGATGCAGCTTCTGAACTTGATGATAAATCGG
GAACTATTACTCTAAAAATAGATAAAGATCAGTTTATTAACGCTGTTGAACTGTTACGTCAAAATGGTTTCCCGAAACCC
CATTACTCTAGCATTGAAGATCTATTTCCTTCTGGTCAGCTCGTGACCTCTCCAACGCAGGAGGAAGCAAAAATGAATTA
CCTTAAAGAACAGCAATTAGAGCGGACCTTATCGACCATGGATGGCGTCATAAGTGCTCGGGTGACCATAGCCGAGATGG
AGTTAGATCCAAATAGACGAGAGCCAACAGATAAGTCGGCATCTGTTTTCATTAAGTATTCACCACAGGCTAATCTCAGT
AATGCAAAAAATAACATTAAGAAATTGATACAAAATTCTGTCACTGGTTTAAGTGTAGATAACATTAGTGTCTACCTTCA
GGAGTCTAACTATCGATATCAGCCCATTACGCCATCGACGAGTCATACAGGCAACAGTGGTTTGTTAAGTGCGATTGAGA
CGTACAAACTGCCATTAGTGACTGGCCTATTGATGATATTTCTTATAAGCATGGGTGGTATGTGGTGGATGAGGGGACGA
TATAAAACTTAA

Protein sequence :
MTYFKCTLLLLVILLSGCKVDLFRDLSQDDANQMVALLMLHHIDAASELDDKSGTITLKIDKDQFINAVELLRQNGFPKP
HYSSIEDLFPSGQLVTSPTQEEAKMNYLKEQQLERTLSTMDGVISARVTIAEMELDPNRREPTDKSASVFIKYSPQANLS
NAKNNIKKLIQNSVTGLSVDNISVYLQESNYRYQPITPSTSHTGNSGLLSAIETYKLPLVTGLLMIFLISMGGMWWMRGR
YKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 5e-48 50
ssaJ CAA12196.1 SsaJ Virulence SPI-2 Protein 5e-40 47
ssaJ CAA70532.1 secretion system apparatus Virulence SPI-2 Protein 3e-40 47
ssaJ NP_460374.1 needle complex inner membrane lipoprotein Virulence SPI-2 Protein 4e-40 47
ssaJ YP_216417.1 secretion system apparatus protein SsaJ Virulence SPI-2 Protein 2e-40 46
ssaJ NP_456119.1 putative pathogenicity island lipoprotein Virulence SPI-2 Protein 2e-40 46
ssaJ NP_805080.1 pathogenicity island lipoprotein Virulence SPI-2 Protein 2e-40 46
unnamed AAL06364.1 EscJ Virulence LEE Protein 3e-34 44
ECs4573 NP_312600.1 EscJ Virulence LEE Protein 2e-34 44
escJ AAC38379.1 EscJ Virulence LEE Protein 2e-34 44
escJ AAC31518.1 L0039 Virulence LEE Protein 2e-34 44
escJ YP_003236093.1 T3SS structure protein EscJ Virulence LEE Protein 2e-34 44
escJ ACU09463.1 EscJ protein Virulence LEE Protein 2e-34 44
escJ NP_290273.1 hypothetical protein Virulence LEE Protein 2e-34 44
escJ AAK26710.1 EscJ Virulence LEE Protein 3e-34 43
escJ AAL57537.1 EscJ Virulence LEE Protein 3e-34 43
escJ CAC81857.1 EscJ protein Virulence LEE II Protein 3e-34 43
escJ CAI43879.1 EscJ protein Virulence LEE Protein 3e-34 43
escJ YP_003223480.1 T3SS structure protein EscJ Virulence LEE Protein 3e-34 43
escJ YP_003232148.1 T3SS structure protein EscJ Virulence LEE Protein 3e-34 43
escJ AFO66320.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-33 41
escJ AFO66410.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_2241 YP_003556990.1 type III secretion system apparatus lipoprotein VFG0510 Protein 2e-40 47
SVI_2241 YP_003556990.1 type III secretion system apparatus lipoprotein VFG0725 Protein 1e-34 44
SVI_2241 YP_003556990.1 type III secretion system apparatus lipoprotein VFG0817 Protein 1e-34 44