Gene Information

Name : Sbal678_2283 (Sbal678_2283)
Accession : YP_005273490.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : type III secretion protein, HrcV family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2655749 - 2657806 bp
Length : 2058 bp
Strand : +
Note : KEGG: svo:SVI_2235 type III secretion system apparatus protein, HrcV family; TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein

DNA sequence :
ATGAACCTCATTAGTCGTTGGTTAAGTAAAGCCGCAGGGCGTCACGATATCATCTTAAGTGCCATGTTAATGGTAGCTGT
ATTTATGATGATCTTGCCTCTACCGACACCTTTGATCGACGTATTAATTGCCTTAAACCTTGGCTTGTCGATAGTGTTAT
TGATGATCGCCATATACATCCGTGACCCTTTAGAGTTCTCAGTATTTCCATCCCTACTATTGATCACAACCTTATATCGT
CTGGCACTTACTATCAGTACCAGTCGTTTAATTTTGCTGCAGCATGATGCTGGAGATATTGTATACACCTTCGGTAACTT
CGTTGTCGGCGGCAACTTAGCGGTCGGAATTATTATCTTTGCCATCATCACCATAGTGCAGTTTATCGTTATCACTAAGG
GGTCTGAGCGGGTGGCGGAAGTGAGTGCACGTTTTTCCCTCGATGGTATGCCTGGTAAGCAAATGAGTATCGATGGCGAC
ATGCGTGCTGGCATCATTGACGCTAAAGAGGCAAAGCGTCAACGGGCACAAGTTCAGAAAGAAAGTCAGCTTTATGGCGC
GATGGACGGCGCGATGAAGTTTGTAAAAGGCGATGCCATAGCCAGTATTATTGTCATTTTAACTAATATCATTGGTGGTA
TCGCTGTCGGTGTCATGCAGCACAATATGTCGGCTGCAGAAGCATTAAATACTTATGCAGTCTTGTCTGTCGGGGATGGT
TTGATAGCCCAAATACCTTCGTTACTGATTTCAGTCACTGCAGGCTTAATTGTGACCCGAGTTCCTGGAGAGCAGAGACA
GAATTTAGCCAACGAATTAGTGATGCAAGTAGGGCGTCAACCCGCATCATTGCAAATGGCCGGGATAGTCATGTTCATCT
TTGCTTTAATCCCTGGCTTCCCAATTTTAGTCTTCGGCACACTCGGTTCGGTCGTTTTAGGGGCTTCATTGTGGTTGAAG
CGTCAGCAAAAACGAGCAAGTGCTCAAGGAGAGGAGAGCCATTTCACTGACGCTGGCAAAAGTGACACGGCCAATGTCGA
CAATATGGCACCAGGGGCTGTACCACTGATTTTATATCTTGGAGCCGATGTGCCTATCCATGGGGTTAAAGAGGCACTGC
AAAAACTACGTTGGCAATGGTTTGAACAATTGGGCGTGCCATTACCGGAAATCCAATTACAAATAGCGAAGAAAGGCAGC
CTAGGTTGTTGTGATGTGCTCTTGTACCAAGAATCTGTATTGCAATTGCAGCTAGTACCACAGGAAGCCCTTTTGATTGA
CTCCATCGCAACGATTCCATGCCGTGTCGAGTCCATTCCTTTTAGTAATCAAAGATTGCATTGGATCAAAGGTAATGCGC
TTGAACAGGCGGAAGCCCAAGGTTTAGCTGTTTGTCGTGATGAGCAAATTCCCGCTTATGTGATGGGTAAAGTGATCGAC
CGCTATGCAGGGGAGTTTATTGGTGTACAAGAAACTCGGTATTTAATGGATGCTATGGAGGCTCGCTACGGTGAGCTCGT
CAAGGAACTTCAACGACTGTTGTCTGTGGGGAAGGTCGCCGAGATCCTACAACGCTTAGTCGAAGAGGGGATTTCAGTGC
GCGATCTACGGACTATTTTTGAAACCTTAGTCGAATGGGTGCCAAAGGAGAAAGACATCATCATGTTAACTGAGTATGTA
CGGATTGCGCTTCGCCGTCATATTCGTCGCAAGTTTGCTACCCCACAAGGTTGGATCGCTGTGCTCATGGTTGGAGAAGG
AATTGAAAATGTGATCCGTGAATCGATACGACAATCGACTGCTGGCTCTTATTCGGCCTTGGACATGGCACAAACTCAGC
AAATATTAACCTGCATTCAAGAACAGCTGCCACCGGAACAAACCTGTGTACTGTTGACTTCGCTCGATGTGCGCCGTTAC
CTGCGAAAAATCGTAGAACGCGAGTTATTTAGCACACCCGTTTTGTCGTTTCAGGAATTAGGCGACGATGCAGAAATAAA
AGTCATAGGCCAAGTGGACTTAGTGGGTGAGGTACTCGATGCCGCACTGGCGAGCTAA

Protein sequence :
MNLISRWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVFPSLLLITTLYR
LALTISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGIIIFAIITIVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGD
MRAGIIDAKEAKRQRAQVQKESQLYGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDG
LIAQIPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVFGTLGSVVLGASLWLK
RQQKRASAQGEESHFTDAGKSDTANVDNMAPGAVPLILYLGADVPIHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGS
LGCCDVLLYQESVLQLQLVPQEALLIDSIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVID
RYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFETLVEWVPKEKDIIMLTEYV
RIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRY
LRKIVERELFSTPVLSFQELGDDAEIKVIGQVDLVGEVLDAALAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 3e-176 61
ssaV YP_216422.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 6e-147 54
ssaV CAA70536.1 secretion system apparatus Virulence SPI-2 Protein 3e-147 54
ssaV NP_460379.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 4e-147 54
ssaV NP_805085.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 9e-147 53
ssaV NP_456114.1 putative type III secretion protein Virulence SPI-2 Protein 9e-147 53
escV AAC38382.1 EscV Virulence LEE Protein 5e-142 51
escV AAC31514.1 L0035 Virulence LEE Protein 2e-141 51
escV NP_290269.1 hypothetical protein Virulence LEE Protein 2e-141 51
escV ACU09459.1 EscV protein Virulence LEE Protein 2e-141 51
ECs4569 NP_312596.1 hypothetical protein Virulence LEE Protein 2e-141 51
escV AAL57541.1 EscV Virulence LEE Protein 8e-142 51
unnamed AAL06368.1 EscV Virulence LEE Protein 2e-138 51
escV YP_003236089.1 putative translocator EscV Virulence LEE Protein 3e-141 51
escV CAC81861.1 EscV protein Virulence LEE II Protein 2e-141 51
escV YP_003223476.1 translocator EscV Virulence LEE Protein 2e-141 51
escV CAI43875.1 EscV protein Virulence LEE Protein 1e-141 51
escV YP_003232152.1 T3SS structure protein EscV Virulence LEE Protein 1e-141 51
escV AAK26714.1 EscV Virulence LEE Protein 8e-142 51
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-137 50
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-137 50
lssD AAO18050.1 LssD Virulence TTSS locus Protein 3e-127 47
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 4e-57 43
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 4e-57 43
invA AAS66860.1 InvA Not tested SSR-2 Protein 3e-91 42
invA NP_461817.1 needle complex export protein Virulence SPI-1 Protein 2e-97 42
invA YP_217815.1 invasion protein Virulence SPI-1 Protein 2e-97 42
invA NP_457290.1 possible secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-97 42
invA NP_806499.1 virulence-associated secretory protein Virulence SPI-1 Protein 2e-97 42
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 1e-56 42
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 2e-56 42
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 7e-56 42
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 3e-56 42
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 6e-56 42
ECs3731 NP_311758.1 EivA Not tested LIM Protein 9e-98 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0514 Protein 2e-147 54
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0813 Protein 1e-141 51
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0729 Protein 3e-142 51
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0198 Protein 1e-112 46
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0064 Protein 2e-129 46
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0384 Protein 2e-127 45
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG0557 Protein 7e-98 42
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG1780 Protein 1e-97 41
Sbal678_2283 YP_005273490.1 type III secretion protein, HrcV family VFG2126 Protein 1e-99 41