Gene Information

Name : Sbal678_2284 (Sbal678_2284)
Accession : YP_005273491.1
Strain : Shewanella baltica OS678
Genome accession: NC_016901
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2657819 - 2659150 bp
Length : 1332 bp
Strand : +
Note : TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: svo:SVI_2234 ATPase, FliI/YscN family; SMART: AAA ATPase

DNA sequence :
ATGAAATTACCCAGTAAAGAAACACTTTATGCACAACTCGAACCTAGTTTATTCGCCACTCAGAGTCTGTTGCCTGTTCC
ATCGGTTCGCTATTTCGGCAAAGTTCAAGAAGTGGGGGCCACACTCGTGCGTGCAACTTTGCCCGGTGCGCATCAAGGAG
AGCTTTGTCTCATTGGTAATCGCCTCAGCGCCGAAGTCGTTGCGGTAAAAGGCGATGAAGCCCTGTTATCGCCCTTCGAC
GTTACGGCGGGACTATGCAGTGGAGAATTAGTTGAAACCTTAGGTCATGGGCATCAAGTCCCCTTAGGTCAAGGCTTGCT
TGGTCGAGTAGTCGATGGTCTTGGTGCTCCTATGGATGGCTATGGACTGACTGCAACGTCATTAAGGCCTAACCAAGGTT
CTGCACCTAATCCATTATCACGACAACTTATTGATACTGTCATGCCCATGGGGATCCGCGCTATTGACAGCGCCCTCGCC
TGTGGCATCGGCCAAAGGATTGGTATTTTTGCCGCAGCAGGAGGGGGAAAGAGTACCTTACTTGGCATGATCGCCGCGCA
CTGCCAAGCGGATGTGATTGTACTAACCTTAGTCGGCGAGCGTGGCCGTGAAGTCCGTGAGTTTATCGAATATAACCTCA
CGCCAGAGGCAAGAGCGCGCACTGTGATGGTGGTTGCTACATCGGATCGTCCTCCGCTTGAGCGAATGAAAGCCACACTA
ACGGCAACGACCATTGCTGAGTACTTTCGCGATCAAGGTAAGAATGTGCTGTTGATGGTGGATTCACTGACCCGATTTGC
CCGCAGTGCGAGGGAAATTGCGTTGGCGGCTGGCGAGAGCCCAGTGTCGAGCGGTTATCCTCCAAGTGTCTTTGTCAATT
TATCGGCCTTAGTCGAACGAGCTGGCCCCGCTGCGAAAGGTAGCATCACTGGCATATATACCGTACTGGTTGAAGGGGAT
GATATGAATGAACCTATCGCCGATGAAGTTCGTTCCTTACTTGATGGACACATAGTGCTATCACGTCGACTCGCTGGAGC
GGGCCATTACCCTGCAATTGATATCAATGCCAGTGTTAGCAGGGTAATGGATCAGATTGTTAGCCCTGAGCAGCGGTGTA
ATGCCGCCAAGATGCGCCAGTTACTGGCATTGTATCAAGAGGTTCAATTACTCATCCGAGTGGGTGAATACGTGCAAGGT
GAAGATCAAGAAACCGATGAAGCAGTGGCTCGCCATCAGGATATTCAGCAGTTTTTGTGTCAATCAGTCAATGAATTCAG
TCCCTATGAAGAGACACTACAAAAATTGAAATTATTGCTTTTAAGCCATTAA

Protein sequence :
MKLPSKETLYAQLEPSLFATQSLLPVPSVRYFGKVQEVGATLVRATLPGAHQGELCLIGNRLSAEVVAVKGDEALLSPFD
VTAGLCSGELVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATSLRPNQGSAPNPLSRQLIDTVMPMGIRAIDSALA
CGIGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLTLVGERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATL
TATTIAEYFRDQGKNVLLMVDSLTRFARSAREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAKGSITGIYTVLVEGD
DMNEPIADEVRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCNAAKMRQLLALYQEVQLLIRVGEYVQG
EDQETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLKLLLLSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-114 60
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-104 60
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-104 60
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-105 60
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 5e-105 60
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-105 60
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-101 55
escN AAC31513.1 L0034 Virulence LEE Protein 2e-103 53
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-103 53
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-103 53
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-103 53
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-103 53
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-103 53
escN AAC38383.1 EscN Virulence LEE Protein 3e-103 53
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-103 53
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-103 53
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-103 53
unnamed AAL06369.1 EscN Virulence LEE Protein 9e-103 52
escN AAK26715.1 EscN Virulence LEE Protein 5e-103 52
escN AAL57542.1 EscN Virulence LEE Protein 5e-103 52
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-94 52
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-94 52
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-92 52
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-92 52
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-94 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-94 51
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-94 51
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-94 51
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-94 51
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-100 50
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-100 50
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-79 49
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-79 49
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 6e-84 49
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-74 48
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-77 48
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-76 48
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-84 47
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 5e-74 46
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 5e-74 46
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-77 46
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-77 46
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 8e-78 46
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 2e-73 45
invC AAS66861.1 InvC Not tested SSR-2 Protein 1e-70 45
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 5e-73 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-75 41
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 1e-75 41
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-75 41
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-75 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0515 Protein 2e-104 60
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0390 Protein 4e-107 56
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0192 Protein 5e-105 55
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0812 Protein 9e-104 53
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0730 Protein 1e-103 53
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0048 Protein 4e-103 53
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG1254 Protein 9e-84 52
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG2331 Protein 9e-80 50
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG2144 Protein 4e-90 49
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG2499 Protein 2e-77 49
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG1778 Protein 4e-74 45
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG1008 Protein 8e-70 43
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG2459 Protein 4e-75 43
Sbal678_2284 YP_005273491.1 FliI/YscN family ATPase VFG0555 Protein 6e-76 41