Gene Information

Name : gabD (PPUBIRD1_0236)
Accession : YP_005928147.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Unknown
Product : GabD
Function : -
COG functional category : -
COG ID : -
EC number : 1.2.1.16
Position : 282379 - 283821 bp
Length : 1443 bp
Strand : +
Note : Succinate-semialdehyde dehydrogenase [NADP+]

DNA sequence :
ATGCAGCTCAAAGACGCTCAGTTGTTCCGCCAGCAAGCCTATATCAATGGTGAGTGGCTGGATGCGGACAACGGCCAGAC
CATCAAGGTGACCAACCCGGCCACCGGCGAAGTCATCGGTACCGTGCCGAAGATGGGCACTGCGGAAACCCGCCGCGCCA
TCGAAGCCGCCGACAAGGCCCTGCCGGCATGGCGTGCCCTGACTGCGAAAGAGCGCTCGGCCAAGCTGCGTCGCTGGTTC
GAACTGATGATCGAGAACCAGGACGACCTGGCTCGCCTGATGACCACCGAACAGGGCAAGCCGCTGGCCGAAGCCAAGGG
CGAAATCGCCTACGCTGCCTCGTTCATCGAGTGGTTCGCCGAAGAAGCCAAGCGCATCTACGGTGACACCATCCCGGGCC
ACCAGCCAGACAAGCGCCTGATTGTCATCAAGCAGCCAATCGGCGTTACCGCGGCCATCACCCCGTGGAACTTCCCGGCC
GCCATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCTGGCTGCACCATGGTCCTCAAGCCGGCTTCGCAAACCCCATA
CTCCGCTCTGGCGCTGGTCGAGCTGGCCCACCGTGCCGGCATCCCGGCTGGCGTGCTGAGTGTGGTTACCGGCAGCGCCG
GCGAAGTTGGCGGCGAACTGACCGGCAACTCCCTGGTACGCAAGCTGTCCTTCACCGGCTCGACCGAAATCGGTCGCCAG
CTGATGGAAGAATGCGCCAAGGACATCAAGAAGGTTTCCCTGGAGCTGGGTGGCAACGCCCCGTTCATCGTGTTCGACGA
CGCCGACCTGGACAAGGCGGTCGAGGGCGCGATCATCTCCAAGTACCGTAACAACGGCCAGACCTGCGTCTGCGCCAACC
GTATCTACGTGCAGGACGGCGTCTACGACGCGTTCGCCCAGAAGCTGGCCGCTGCAGTTGCCAAGCTGAAGATCGGTAAC
GGCCTGGAAGAAGGCACCACCACTGGCCCGCTGATCGATGGCAAGGCTGTCGCCAAGGTCCAGGAACACATCGAGGACGC
CGTCAGCAAAGGCGCCAAAGTGCTGTCCGGTGGCAAGCTGATCGAAGGCAACTTCTTCGAGCCGACCATCCTGGTTGACG
TACCGAAGACCGCTGCTGTCGCCAAGGAAGAGACGTTCGGCCCACTGGCGCCGCTCTTCCGCTTCAAAGACGAAGCCGAA
GTCATCGCCATGTCCAACGACACCGAGTTCGGCCTGGCCTCGTACTTCTACGCCCGTGACATGAGCCGTGTGTTCCGTGT
CGCCGAAGCCCTGGAGTACGGCATGGTGGGTATCAACACCGGCCTGATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCA
AGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTC
TGA

Protein sequence :
MQLKDAQLFRQQAYINGEWLDADNGQTIKVTNPATGEVIGTVPKMGTAETRRAIEAADKALPAWRALTAKERSAKLRRWF
ELMIENQDDLARLMTTEQGKPLAEAKGEIAYAASFIEWFAEEAKRIYGDTIPGHQPDKRLIVIKQPIGVTAAITPWNFPA
AMITRKAGPALAAGCTMVLKPASQTPYSALALVELAHRAGIPAGVLSVVTGSAGEVGGELTGNSLVRKLSFTGSTEIGRQ
LMEECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRIYVQDGVYDAFAQKLAAAVAKLKIGN
GLEEGTTTGPLIDGKAVAKVQEHIEDAVSKGAKVLSGGKLIEGNFFEPTILVDVPKTAAVAKEETFGPLAPLFRFKDEAE
VIAMSNDTEFGLASYFYARDMSRVFRVAEALEYGMVGINTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCISV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 3e-155 68
hpaE AAO17179.1 HpaE Not tested tcd island Protein 7e-69 41
cur_1509 YP_001800903.1 NAD-dependent aldehyde dehydrogenase Not tested Not named Protein 3e-86 41