Gene Information

Name : Sbal175_2388 (Sbal175_2388)
Accession : YP_006020945.1
Strain : Shewanella baltica BA175
Genome accession: NC_017571
Putative virulence/resistance : Virulence
Product : type III secretion protein, YscU/HrpY family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2834760 - 2835809 bp
Length : 1050 bp
Strand : -
Note : KEGG: svo:SVI_2227 type III secretion system EscU protein; TIGRFAM: Type III secretion protein HrpY/HrcU; PFAM: Type III secretion exporter

DNA sequence : 
ATGGCCGAGAAAACAGAAAAACCCACAGAAAAACGCTTACGAGAAGCGAGAAATCGCGGCCAGGTCATTAAAAGTGCAGA
AATCGTCACCGGACTACAGATGGCGATCATTCTCGGGTACTTTCTCTACGAAGGGCCCGCACTCGTTCAAGCCATTATGG
CGTTAATCGACTTAACCATTAATGCCATCAATCTTCCCCTCGAAACGGCGGCCGAGCAAATCGTGGGTACCTTCGCCATG
CTGGCACTACGTTTTCTCGGTGGGCTGACATTAGTACTCGTGTTTACCATAGTGGTGGGGAACTTAGTCCAAACAGGCCC
CGTTTGGGCGACTGAGTCTATAATGCCGAGCATGAATAAACTCAATGTTATGAATAATGCTAAGCAACTTATTTCACTGA
AAAGTCTATTCGAGCTCGCTAAAAACCTCGTCAAAGTCACAGTGTTGAGTTTAGTGTTTTACTATCTGCTCCATCGTTAC
GTTAACGCCTTTCAATACTTGCCTCTATGCGGAGAAGCCTGCGGCATCAGTGTGATTTCGACCATGATCACATGGCTCTG
GGGAAGCTTTTTAGGATGCTACTTAATATTTGGGATCGCCGATTATGCATTTCAACGCTATAGCCTAATGAAAGAGCTCA
AAATGTCCAAAGATGACACCAAACAAGAGTACAAAGATTCTGAAGGTAACCCCGAAATGAAACAGAAACGCCGCGAAACC
CAGCGTGAAGTCGCGTCTGGCAGCCTTGCCAATAACGTTCGCAAAGCCACTGTGGTTGTACGAAATCCAACCCATATTGC
CGTGTGTTTGTATTATTGCGAAGGCGAGACACCGTTGCCTAAAGTGCTCGAAAAAGCCGAAGATCATATGGCTTTACACA
TAGTGGCTTTAGCCGAGAAAGCAGGGGTGCCAATAGTCGAGAACATTCCATTGGCACGCGCCTTATTTAAACACGTTGAG
ACTGGAGACGTGATTCCTGAGAGCCTATTTGAACCCGTAGCAGAGCTATTGCGTTTAGTGATGGCTATATCCTATGACAA
TATGGAGTAA

Protein sequence : 
MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTINAINLPLETAAEQIVGTFAM
LALRFLGGLTLVLVFTIVVGNLVQTGPVWATESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRY
VNAFQYLPLCGEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRET
QREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEKAGVPIVENIPLARALFKHVE
TGDVIPESLFEPVAELLRLVMAISYDNME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 4e-87 51
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 5e-70 46
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-68 46
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 7e-70 46
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 3e-70 46
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 3e-70 46
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-65 43
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-65 43
unnamed AAL06357.1 EscU Virulence LEE Protein 2e-66 42
escU AAK26703.1 EscU Virulence LEE Protein 8e-69 42
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 2e-67 42
escU AAL57530.1 EscU Virulence LEE Protein 8e-69 42
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 1e-67 42
escU CAI43886.1 EscU protein Virulence LEE Protein 8e-69 42
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 5e-68 42
escU AAC31525.1 L0046 Virulence LEE Protein 1e-67 42
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 1e-68 42
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 1e-67 42
escU AAC38372.1 EscU Virulence LEE Protein 1e-67 42
escU CAC81850.1 EscU protein Virulence LEE II Protein 4e-68 42
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 2e-67 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal175_2388 YP_006020945.1 type III secretion protein, YscU/HrpY family VFG0522 Protein 3e-70 46
Sbal175_2388 YP_006020945.1 type III secretion protein, YscU/HrpY family VFG0718 Protein 6e-68 42
Sbal175_2388 YP_006020945.1 type III secretion protein, YscU/HrpY family VFG0824 Protein 7e-68 42