Gene Information

Name : Sbal175_2396 (Sbal175_2396)
Accession : YP_006020953.1
Strain : Shewanella baltica BA175
Genome accession: NC_017571
Putative virulence/resistance : Virulence
Product : type III secretion protein, HrcV family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2840794 - 2842851 bp
Length : 2058 bp
Strand : -
Note : KEGG: svo:SVI_2235 type III secretion system apparatus protein, HrcV family; TIGRFAM: Type III secretion protein HrcV; PFAM: Type III secretion system FHIPEP

DNA sequence :
ATGAACCTCATCAGTCGTTGGTTAAGTAAAGCCGCAGGGCGTCACGATATCATCTTAAGTGCCATGTTAATGGTAGCCGT
ATTTATGATGATCTTGCCTCTACCGACACCTTTGGTCGATGTTTTAATTGCCTTAAACCTTGGCTTGTCCATAGTGTTAT
TAATGATCGCCATTTACATCCGTGACCCTTTAGAGTTCTCAGTCTTTCCATCCCTACTACTGATCACAACCTTGTACCGT
CTGGCTCTCACTATCAGTACCAGCCGTTTGATTTTACTGCAGCATGATGCAGGGGATATCGTATATACCTTCGGTAACTT
CGTCGTCGGCGGCAACTTAGCGGTCGGAATTATTATCTTTGCCATCATCACCATAGTGCAGTTTATCGTGATTACTAAGG
GTTCAGAGCGGGTGGCGGAGGTGAGTGCACGTTTTTCCCTCGATGGAATGCCAGGTAAGCAAATGAGTATCGATGGCGAT
ATGCGTGCTGGCATCATTGACGCTAAAGAGGCAAAACGCCAACGTGCGCAAGTTCAGAAAGAAAGTCAGCTCTATGGCGC
GATGGACGGCGCGATGAAGTTTGTCAAAGGCGATGCCATCGCCAGTATTATTGTCATTTTAACCAATATCATAGGAGGTA
TCGCTGTCGGTGTCATGCAGCACAATATGTCGGCTGCCGAAGCATTAAATACCTATGCAGTCTTGTCTGTCGGGGATGGT
TTGATAGCCCAAATACCTTCACTACTGATTTCAGTCACCGCAGGCTTAATCGTGACCCGAGTGCCAGGAGAGCAGAGACA
GAACTTAGCCAACGAATTAGTGATGCAAGTAGGACGTCAACCTGCATCATTGCAAATGGCGGGGATCGTGATGTTCATCT
TTGCCTTAATCCCAGGTTTCCCAATTTTAGTCTTCGGCACACTCGGTTCGGTCGTCTTAGGGGCTTCATTGTGGTTGACG
CGTCAGCAAAAACGAGCGAGTGCTCAAGGGGATGAGAGCCATTTCACCGAAGCAGGTAAAAGTGAGATGGCCAATGTCGA
CAATATGGCGCCGGGAGCTGTACCGCTGATTTTATATCTTGGTGCCGATGTGCCTATCCATGGGGTTAAAGAAGCACTGC
AAAAACTGCGTTGGCAATGGTTTGAGCAATTGGGCGTGCCATTACCGGAAATACAATTACAGATAGCTAAGAAAGGCACC
CTAGGCCGCTGTGATGTACTTTTGTACCAAGAGCCCGTATTGCAACTGCAATTAGCACCACAGGAAGTCCTGTTGATTGA
CCCCATCGCAACGATTCCATGCCGTGTCGAGTCCATCCCTTTTAGTAATCAAAGATTGCATTGGATCAAAGGTAATGCGC
TTGAGCAGGCGGAGGCCCAAGGTTTAGCGCTTTGCCGTGATGAGCAAATTCCTGCTTATGTGATGGGTAAAGTGATCGAC
CGCTATGCGGGGGAGTTTATCGGCGTACAAGAAACCCGTTATTTAATGGATGCCATGGAGGCTCGCTACGGTGAGCTAGT
CAAAGAACTTCAACGACTGTTGTCTGTGGGGAAGGTCGCCGAGATCCTACAACGCTTAGTCGAAGAGGGGATTTCAGTGC
GCGATCTACGGACTATTTTTGAAACCTTAGTCGAATGGGTACCAAAGGAGAAAGACATCATCATGTTAACTGAGTATGTG
CGGATTGCGCTTCGCCGCCATATTCGCCGCAAGTTTGCGACCCCACAAGGTTGGATTGCTGTGCTTATGGTCGGAGAAGG
AATTGAAAATGTGATCCGTGAATCGATACGACAATCGACAGCCGGTTCTTATTCAGCCCTAGATATGGCGCAAACTCAGC
AAATATTAACCTGCATTCAAGAACAGCTGCCACCGGAGCAAACCTGTGTACTGCTGACTTCGCTCGATGTGCGCCGTTAC
CTGCGAAAAATCGTAGAACGCGAGTTATTTAGCACACCCGTTTTGTCGTTTCAGGAATTAGGCGACGATGCAGAAATAAA
AGTCATAGGCCAAGTGGACTTAGTGGGTGACATGCTCGATGCCGCACTGGCGAGCTAA

Protein sequence :
MNLISRWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLEFSVFPSLLLITTLYR
LALTISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGIIIFAIITIVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGD
MRAGIIDAKEAKRQRAQVQKESQLYGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDG
LIAQIPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVFGTLGSVVLGASLWLT
RQQKRASAQGDESHFTEAGKSEMANVDNMAPGAVPLILYLGADVPIHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGT
LGRCDVLLYQEPVLQLQLAPQEVLLIDPIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLALCRDEQIPAYVMGKVID
RYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFETLVEWVPKEKDIIMLTEYV
RIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAGSYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRY
LRKIVERELFSTPVLSFQELGDDAEIKVIGQVDLVGDMLDAALAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 1e-175 62
ssaV NP_456114.1 putative type III secretion protein Virulence SPI-2 Protein 7e-145 54
ssaV NP_805085.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 7e-145 54
ssaV YP_216422.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 3e-145 54
ssaV CAA70536.1 secretion system apparatus Virulence SPI-2 Protein 1e-145 54
ssaV NP_460379.1 secretion system apparatus protein SsaV Virulence SPI-2 Protein 2e-145 54
escV CAC81861.1 EscV protein Virulence LEE II Protein 5e-139 51
escV YP_003232152.1 T3SS structure protein EscV Virulence LEE Protein 3e-139 51
escV AAK26714.1 EscV Virulence LEE Protein 2e-139 51
escV AAL57541.1 EscV Virulence LEE Protein 2e-139 51
escV AAC38382.1 EscV Virulence LEE Protein 2e-139 51
escV YP_003236089.1 putative translocator EscV Virulence LEE Protein 3e-138 51
escV AAC31514.1 L0035 Virulence LEE Protein 6e-139 51
escV NP_290269.1 hypothetical protein Virulence LEE Protein 8e-139 51
escV ACU09459.1 EscV protein Virulence LEE Protein 6e-139 51
ECs4569 NP_312596.1 hypothetical protein Virulence LEE Protein 8e-139 51
escV YP_003223476.1 translocator EscV Virulence LEE Protein 5e-139 50
escV CAI43875.1 EscV protein Virulence LEE Protein 4e-139 50
unnamed AAL06368.1 EscV Virulence LEE Protein 1e-136 50
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-135 50
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-135 50
lssD AAO18050.1 LssD Virulence TTSS locus Protein 1e-125 47
invA YP_217815.1 invasion protein Virulence SPI-1 Protein 4e-95 42
invA NP_457290.1 possible secretory protein (associated with virulence) Virulence SPI-1 Protein 4e-95 42
invA NP_806499.1 virulence-associated secretory protein Virulence SPI-1 Protein 4e-95 42
invA NP_461817.1 needle complex export protein Virulence SPI-1 Protein 4e-95 42
invA AAS66860.1 InvA Not tested SSR-2 Protein 7e-89 42
hrcV AAT96139.1 HrcV Virulence T-PAI Protein 8e-93 41
hrcV AAT96193.1 HrcV Virulence T-PAI Protein 8e-93 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0514 Protein 7e-146 54
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0729 Protein 1e-139 51
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0813 Protein 3e-139 51
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0064 Protein 2e-128 46
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0198 Protein 3e-111 46
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0384 Protein 3e-126 45
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG0557 Protein 2e-95 42
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG1780 Protein 5e-96 41
Sbal175_2396 YP_006020953.1 type III secretion protein, HrcV family VFG2126 Protein 8e-99 41