Gene Information

Name : SE451236_12835 (SE451236_12835)
Accession : YP_008265593.1
Strain : Salmonella enterica 08-1736
Genome accession: NC_021820
Putative virulence/resistance : Virulence
Product : outer membrane secretin SsaC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2727016 - 2728509 bp
Length : 1494 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGGTAGTAAATAAACGTTTAATCTTAATTTTACTATTTATACTCAATACAGCAAAGAGTGATGAGTTATCATGGAAAGG
TAATGACTTCACCCTTTATGCCAGACAAATGCCATTAGCAGAGGTTTTACATCTGCTCTCAGAGAACTATGATACGGCTA
TTACTATTAGCCCATTGATAACAGCTACATTTAGTGGAAAAATTCCGCCTGGACCACCGGTCGATATTTTGAATAACCTG
GCAGCACAATATGATTTGCTTACCTGGTTTGATGGCAGCATGTTATATGTATATCCTGCATCGTTATTAAAACATCAGGT
TATCACTTTCAATATTTTATCTACTGGACGGTTCATTCATTACTTACGCAGCCAGAATATCCTTTCATCACCGGGATGCG
AGGTTAAAGAAATTACCGGTACCAAAGCTGTGGAGGTGAGCGGTGTTCCCAGCTGCCTGACTCGTATTAGTCAATTAGCT
TCAGTGCTGGATAATGCGTTAATCAAACGAAAAGACAGTGCGGTGAGTGTAAGTATATACACGCTTAAGTATGCCACTGC
GATGGATACCCAGTACCAATATCGCGATCAGTCCGTCGTGGTTCCAGGGGTCGTTAGTGTATTGCGTGAGATGAGTAAAA
CCAGCGTCCCGACGTCATCGACGAACAATGGTTCACCCGCTACACAGGCATTGCCCATGTTTGCTGCCGACCCACGCCAG
AATGCAGTGATCGTTCGTGATTATGCGGCCAATATGGCCGGGTATCGGAAACTCATCACAGAATTAGATCAACGCCAGCA
GATGATAGAGATTTCGGTGAAAATTATCGATGTTAATGCTGGAGATATTAACCAGTTAGGCATCGACTGGGGAACGGCAG
TGTCGCTGGGTGGCAAGAAAATTGCGTTCAATACAGGTTTGAATGACGGTGGTGCTAGTGGTTTTTCAACGGTAATCAGC
GATACCTCAAACTTTATGGTGCGTCTGAATGCCCTGGAAAAAAGCTCTCAGGCTTATGTACTTTCCCAGCCATCTGTGGT
GACTTTAAATAATATCCAGGCTGTGCTGGATAAAAATATTACTTTCTATACCAAACTGCAGGGAGAAAAAGTGGCTAAAC
TTGAATCCATCACTACGGGTTCTTTGTTACGCGTTACACCTCGCTTGTTAAATGACAATGGCACGCAAAAAATAATGCTT
AATCTTAATATTCAGGATGGACAACAAAGTGATACGCAAAGCGAAACAGACCCGCTGCCCGAAGTGCAAAATTCTGAAAT
TGCTTCGCAAGCCACATTATTGGCCGGGCAAAGTCTATTGCTGGGAGGGTTTAAACAAGGTAAACAAATCCACTCGCAAA
ACAAAATCCCTTTATTGGGCGATATTCCTGTTGTAGGTCATTTGTTTCGCAATGATACGACTCAAGTACATAGTGTAATC
AGGCTTTTTTTGATTAAAGCCTCAGTAGTAAATAATGGCATATCTCATGGTTAA

Protein sequence :
MVVNKRLILILLFILNTAKSDELSWKGNDFTLYARQMPLAEVLHLLSENYDTAITISPLITATFSGKIPPGPPVDILNNL
AAQYDLLTWFDGSMLYVYPASLLKHQVITFNILSTGRFIHYLRSQNILSSPGCEVKEITGTKAVEVSGVPSCLTRISQLA
SVLDNALIKRKDSAVSVSIYTLKYATAMDTQYQYRDQSVVVPGVVSVLREMSKTSVPTSSTNNGSPATQALPMFAADPRQ
NAVIVRDYAANMAGYRKLITELDQRQQMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLNDGGASGFSTVIS
DTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML
NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVI
RLFLIKASVVNNGISHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 0.0 100
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 0.0 100
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 0.0 99
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 0.0 99
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 0.0 99
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 5e-125 53
escC AAK26708.1 EscC Virulence LEE Protein 2e-96 45
escC AAL57535.1 EscC Virulence LEE Protein 2e-96 45
escC CAC81855.1 EscC protein Virulence LEE II Protein 2e-96 45
escC CAI43881.1 EscC protein Virulence LEE Protein 2e-96 45
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 3e-96 45
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 3e-96 45
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 2e-100 44
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 2e-100 44
unnamed AAL06362.1 EscC Virulence LEE Protein 2e-95 44
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 6e-95 44
escC NP_290275.1 hypothetical protein Virulence LEE Protein 4e-95 44
escC AAC38377.1 EscC Virulence LEE Protein 2e-94 44
ECs4575 NP_312602.1 EscC Virulence LEE Protein 4e-95 44
escC AAC31520.1 L0041 Virulence LEE Protein 3e-95 44
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 3e-95 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SE451236_12835 YP_008265593.1 outer membrane secretin SsaC VFG0495 Protein 0.0 100
SE451236_12835 YP_008265593.1 outer membrane secretin SsaC VFG0819 Protein 2e-95 44
SE451236_12835 YP_008265593.1 outer membrane secretin SsaC VFG0723 Protein 1e-94 44