Gene Information

Name : Sputcn32_0258 (Sputcn32_0258)
Accession : YP_001181792.1
Strain : Shewanella putrefaciens CN-32
Genome accession: NC_009438
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional activator CusR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 274633 - 275313 bp
Length : 681 bp
Strand : -
Note : response regulator in two-component regulatory system with CusS; regulates the copper efflux system

DNA sequence :
ATGAAAATATTGATCGTCGAAGACGAAATTAAAACAGGTGAATATCTCAGCAAAGGGCTTAGAGAGGCAGGGTTCGTAGT
GGATCACGCTGATAATGGTCTTACCGGATATCATCTCGCCATGACAGCCGAGTATGATTTAGTCATTCTGGACATCATGC
TGCCTGATGTGAACGGCTGGGATATCATCCGGATGCTGCGCACTGCCGGAAAGGGTATGCCGGTCTTACTGCTGACGGCC
CTCGGCACGATCGAACACAGGGTCAAAGGACTGGAACTGGGTGCGGACGATTATCTGGTTAAACCCTTTGCGTTTGCCGA
ACTGCTAGCCCGGGTGAAAACCCTTCTGAGGCGGGGAAACACGATGATCACGGAAAGCCAGTTTAGGGTGGCTGGTCTCT
CGATTGATCTCGTATCCAGAAAAGTCAGTCGCGCCGGAAACCGCATTGTGCTCACCAGTAAAGAGTTCAGCCTGCTGGAA
TTTTTCATTCGCCATCAGGGAGAGGTTCTTCCCCGTTCCCTGATTGCCTCTCAGGTCTGGGACATGAATTTTGACAGCGA
CACTAACGCGATTGATGTCGCCGTAAAGCGACTCCGCGCTAAAATAGACAACGATTACGAGACAAAGCTGATCCAGACAG
TCCGGGGCGTGGGCTATATGCTGGAGGTCCCGGATGCATAG

Protein sequence :
MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWDIIRMLRTAGKGMPVLLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGNTMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLE
FFIRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEVPDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-54 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0347 Protein 3e-93 92
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0111 Protein 2e-94 86
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0638 Protein 2e-64 62
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0083 Protein 6e-71 61
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0197 Protein 1e-64 59
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0308 Protein 5e-61 57
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR BAC0125 Protein 5e-63 56
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR HE999704.1.gene1202. Protein 6e-36 41
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR AE000516.2.gene3505. Protein 8e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR VFG0596 Protein 1e-55 54
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR VFG1390 Protein 7e-42 43
Sputcn32_0258 YP_001181792.1 DNA-binding transcriptional activator CusR VFG1389 Protein 2e-34 41